| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is flgG [H]
Identifier: 103488387
GI number: 103488387
Start: 3058824
End: 3059651
Strand: Direct
Name: flgG [H]
Synonym: Sala_2910
Alternate gene names: 103488387
Gene position: 3058824-3059651 (Clockwise)
Preceding gene: 103488386
Following gene: 103488388
Centisome position: 91.44
GC content: 65.46
Gene sequence:
>828_bases ATGTCATTCTATACGTCGCTTTCGGGCCTCAAGGCATCGCAGACCGACATGTCGGTCATCTCGAACAATATCGCCAACGC CGGCGCGGTCGGCTTCAAGCGGAGCAAGGCGCAGTTCGGCGACATTTTCGCCTCGTCGCCGACGCAGTCGACGAAGATGA TCGCTGGCCAGGGCACGCGCCTCAATGGCATCACCCAGCAGTTCACGCAGGGCTCGTATGAATCGAGCGAAAAGACGCTC GACCTCGCGATCGTCGGCGAGGGTCTGTTCATCGTCAAGGGCGAGCCGCCGCGCGAACAGGTCAGCTATACGCGCAACGG TTCGTTCGAACCGACCCCCGACGGCTATGTCATCGACACGACGGGGGCGCGGCTGCAGCTGCTTCCCGTCGATGCCGTCG GCAATGTCACCGACAACACGCTCGCCGGCGCCTTTGATTTCCAGCTGCCCACCGGCGCGCCGTCGGACCCGGCTTCGGCG CTGGTGAACGTCACCATCGGCCTCGACGGCCTCGTCACCGCGACCTTTGCCAATGGCGAGGACCAGATGCTCGGCAAGGT GGCGATGGCGACTTTCCCCACCATGTCGGGCCTGCGTCCGACGGGCGACGCGCACTGGCAGTCGACGGGCGAAAGCGGCC CCCCGACGATCGACGCGGCGACCAACGGGCCGATGGGCGCGATCCGATCGGGCGCGCTCGAACGCTCGAACGTCGACATC ACCGAGGAGCTGGTGATGCTGATGGCGGCGCAGCGCAATTTCCAGGCGAATGCCAAGGCGATCGAGGGCGCGTCGCAGCT GACCCAGACGATCATCGGCCTGCGCTGA
Upstream 100 bases:
>100_bases GCCCAGATTTCGGAGCAGCTCGCGGCGCAGACGCAGCTGCTTCGGGACATCAAGGCCGCCACCCCGGCGCCCGCCCCCAC CACCCAGGAAGGATAAGCCC
Downstream 100 bases:
>100_bases ACCATCGCTGACCACCGCTTCCCGGGAGCCAATCCATGGACCGCCTCATCTACACCAGCCTCTCCGCGATGCGCGGCAGC ATGGCGCGGCAGACGGCGAT
Product: protein of unknown function DUF1078-like protein
Products: NA
Alternate protein names: Distal rod protein [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MSFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRLNGITQQFTQGSYESSEKTL DLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDTTGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASA LVNVTIGLDGLVTATFANGEDQMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDI TEELVMLMAAQRNFQANAKAIEGASQLTQTIIGLR
Sequences:
>Translated_275_residues MSFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRLNGITQQFTQGSYESSEKTL DLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDTTGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASA LVNVTIGLDGLVTATFANGEDQMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDI TEELVMLMAAQRNFQANAKAIEGASQLTQTIIGLR >Mature_274_residues SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRLNGITQQFTQGSYESSEKTLD LAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDTTGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASAL VNVTIGLDGLVTATFANGEDQMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDIT EELVMLMAAQRNFQANAKAIEGASQLTQTIIGLR
Specific function: Unknown
COG id: COG4786
COG function: function code N; Flagellar basal body rod protein
Gene ontology:
Cell location: Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787318, Length=287, Percent_Identity=32.0557491289199, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787316, Length=115, Percent_Identity=40, Blast_Score=94, Evalue=7e-21,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR019776 - InterPro: IPR020013 - InterPro: IPR012834 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 28719; Mature: 28588
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTR CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCC LNGITQQFTQGSYESSEKTLDLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDT CCHHHHHHHCCCCCCCCCEEEEEEEECCEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEC TGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASALVNVTIGLDGLVTATFANGE CCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC DQMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDI HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCH TEELVMLMAAQRNFQANAKAIEGASQLTQTIIGLR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTR CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCC LNGITQQFTQGSYESSEKTLDLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDT CCHHHHHHHCCCCCCCCCEEEEEEEECCEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEC TGARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASALVNVTIGLDGLVTATFANGE CCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC DQMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDI HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCH TEELVMLMAAQRNFQANAKAIEGASQLTQTIIGLR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]