Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488377

Identifier: 103488377

GI number: 103488377

Start: 3051463

End: 3051876

Strand: Direct

Name: 103488377

Synonym: Sala_2900

Alternate gene names: NA

Gene position: 3051463-3051876 (Clockwise)

Preceding gene: 103488376

Following gene: 103488378

Centisome position: 91.22

GC content: 56.04

Gene sequence:

>414_bases
ATGTGGTCCGTGGCGATCTATTATGTCGTTCTGCTCCTCACCGTTGCTGTCGCCGTCCGGCATGGCGGACCGCTTGAACG
CTGGGCAGCCTATACGGCATTGATCGCCTCGGTACTCACGACCGTCGTGACGCCTTTTCCGACCTGGACCAACATCGAAG
TCAATATCTTCATCGTCGATGTGCTGGTGCTCCTGAGCTTCTGGTTCATCGCGCTCCGGACACAGAGTTTCTGGCCCTAC
TGGATCACCGGCTGGCAGTTGATCGCCATTTTCGGCCATATCCAGAAACTGATGTTCGTGGAGATACTGGCGCGGCCCTA
TTCGCTGCTGTCGATGTATATATCCTATCCGATCCTGTTGCTCATCATATACGCATCGGGATCGTCGGGTCGGCGAAAGG
ACGTTGCGGCGTAG

Upstream 100 bases:

>100_bases
GTCGGCGAGGCTGGTCGACGAGGGCAGCAACGATCGCCAGCGCGCCGACGCGCCGACGTTCGCGAAGGCGGGTTGATCCG
CAGGAAAGGTTGACTGCCAC

Downstream 100 bases:

>100_bases
CGGTGGCTCTCCGGGGGCGTTGTCACGATGCAGCAATTCTCGAACCAGGAAATTGCCGAACTGAAATCGCGGGTCGACCA
GATTCACGAGCTGCTCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MWSVAIYYVVLLLTVAVAVRHGGPLERWAAYTALIASVLTTVVTPFPTWTNIEVNIFIVDVLVLLSFWFIALRTQSFWPY
WITGWQLIAIFGHIQKLMFVEILARPYSLLSMYISYPILLLIIYASGSSGRRKDVAA

Sequences:

>Translated_137_residues
MWSVAIYYVVLLLTVAVAVRHGGPLERWAAYTALIASVLTTVVTPFPTWTNIEVNIFIVDVLVLLSFWFIALRTQSFWPY
WITGWQLIAIFGHIQKLMFVEILARPYSLLSMYISYPILLLIIYASGSSGRRKDVAA
>Mature_137_residues
MWSVAIYYVVLLLTVAVAVRHGGPLERWAAYTALIASVLTTVVTPFPTWTNIEVNIFIVDVLVLLSFWFIALRTQSFWPY
WITGWQLIAIFGHIQKLMFVEILARPYSLLSMYISYPILLLIIYASGSSGRRKDVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15600; Mature: 15600

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSVAIYYVVLLLTVAVAVRHGGPLERWAAYTALIASVLTTVVTPFPTWTNIEVNIFIVD
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHH
VLVLLSFWFIALRTQSFWPYWITGWQLIAIFGHIQKLMFVEILARPYSLLSMYISYPILL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIYASGSSGRRKDVAA
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MWSVAIYYVVLLLTVAVAVRHGGPLERWAAYTALIASVLTTVVTPFPTWTNIEVNIFIVD
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHH
VLVLLSFWFIALRTQSFWPYWITGWQLIAIFGHIQKLMFVEILARPYSLLSMYISYPILL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIYASGSSGRRKDVAA
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA