| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yeiH [C]
Identifier: 103488371
GI number: 103488371
Start: 3044761
End: 3045816
Strand: Reverse
Name: yeiH [C]
Synonym: Sala_2894
Alternate gene names: 103488371
Gene position: 3045816-3044761 (Counterclockwise)
Preceding gene: 103488379
Following gene: 103488369
Centisome position: 91.05
GC content: 68.37
Gene sequence:
>1056_bases GTGAAAACGTCCGGACAACATTGGCCGATGGCCGCCGACCTGTACGGCGAGATGCAGCTCGAGGCGAACCCGCCGGCGCG GCGCCGCTGGCACGATTATCTGCCCGGCATTCTCGTCACCGCAATCGCCGCGCTCGCCGCGGCTTGGCTCGCCGATCATT ATGCCGCGCCGATCGTGCTGATGGGCTTGCTCATCGGCCTCGCGCTCTCCTTCCTGTCGCAGGACGTGCGGACGCACGCC GGGCTCGATCTCATGTCGCAGACCGCGCTGCGCATCGGCATCGTGCTCGTCGGGGCGCGGATCACCGCCGTCCAGCTTGC CGAAATGGGGCCGCTGCCGTTCCTGCTGCTCGTCGCCATCATGCTCGCGGTGATCCTTGTGACCGTCGCGAGCGCACATC TTTTTGCGCAGGACCGCCACGCCGCACTGCTCGCGGGTGGCGCGACGGCAATCTGCGGCGCATCGGCGGCGCTCGCGCTC TGGTCGCTGATCGGCGACCGGCGCATCGATCAGGCGCGTTTCACGCTGACGCTCGTCGGCATCACCGTCGCCAGCGCGCT CGCGATGACACTCTATCCGGTGCTCGCCGCAGAGCTGGGGTTGACCGACGCGCAGGCCGGATTCCTGATCGGCGCGTCGA TCCACGACGTCGCGCAGGCGATCGGCGGCGGCTTTTCCTTTTCTCCGCAAGCGGGCGAGGTGGCGACGATCGTCAAGCTG ACGCGCGTTGCGCTGCTCGCGCCGATGCTGATGCTCGTCGCACTATGGCTCGGTCGCCGCGGCGAAGCGGGCGCGCGCAT TCCACTGCGTTTGCCGTGGTTCATTCTGGGGTTCCTGGCCGTGGTCGCGATCAATTCGCTCGTGGCGATCCCGCGGCCGG TGCAGGCGGGCGCCGCGACCGGCGCGCAGGCGCTGTTGCTGCTCGCGATCGTCGCGACCGCGATGAAGGCACGGCTGCAC CTGCTGCTCGATCAGGGGTGGCAGAGCTTTGCGCCGATCATCGTCGCGACGCTGACCAGCTTCCTTTTGTCGCTCGGCGC CGCGCTGCTGTTATGA
Upstream 100 bases:
>100_bases GCGCGGCCTCTAGCAAGGCTGCGGCCCGCCAGCAATGGCCTATCGACCGCGCCGCGCGGATATGCGAAGCGGGCCTTGTC GAAAGGGCAAGGGAGCGGCG
Downstream 100 bases:
>100_bases CGGCGTGACGTCAGAGCAAGCAATTGTTTCCAATTGGGTCGTCATTGCGAGGAGCGAAGCGACGAGGCAATCCCCAGCCA TCGACCGGGCAGGACGATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MKTSGQHWPMAADLYGEMQLEANPPARRRWHDYLPGILVTAIAALAAAWLADHYAAPIVLMGLLIGLALSFLSQDVRTHA GLDLMSQTALRIGIVLVGARITAVQLAEMGPLPFLLLVAIMLAVILVTVASAHLFAQDRHAALLAGGATAICGASAALAL WSLIGDRRIDQARFTLTLVGITVASALAMTLYPVLAAELGLTDAQAGFLIGASIHDVAQAIGGGFSFSPQAGEVATIVKL TRVALLAPMLMLVALWLGRRGEAGARIPLRLPWFILGFLAVVAINSLVAIPRPVQAGAATGAQALLLLAIVATAMKARLH LLLDQGWQSFAPIIVATLTSFLLSLGAALLL
Sequences:
>Translated_351_residues MKTSGQHWPMAADLYGEMQLEANPPARRRWHDYLPGILVTAIAALAAAWLADHYAAPIVLMGLLIGLALSFLSQDVRTHA GLDLMSQTALRIGIVLVGARITAVQLAEMGPLPFLLLVAIMLAVILVTVASAHLFAQDRHAALLAGGATAICGASAALAL WSLIGDRRIDQARFTLTLVGITVASALAMTLYPVLAAELGLTDAQAGFLIGASIHDVAQAIGGGFSFSPQAGEVATIVKL TRVALLAPMLMLVALWLGRRGEAGARIPLRLPWFILGFLAVVAINSLVAIPRPVQAGAATGAQALLLLAIVATAMKARLH LLLDQGWQSFAPIIVATLTSFLLSLGAALLL >Mature_351_residues MKTSGQHWPMAADLYGEMQLEANPPARRRWHDYLPGILVTAIAALAAAWLADHYAAPIVLMGLLIGLALSFLSQDVRTHA GLDLMSQTALRIGIVLVGARITAVQLAEMGPLPFLLLVAIMLAVILVTVASAHLFAQDRHAALLAGGATAICGASAALAL WSLIGDRRIDQARFTLTLVGITVASALAMTLYPVLAAELGLTDAQAGFLIGASIHDVAQAIGGGFSFSPQAGEVATIVKL TRVALLAPMLMLVALWLGRRGEAGARIPLRLPWFILGFLAVVAINSLVAIPRPVQAGAATGAQALLLLAIVATAMKARLH LLLDQGWQSFAPIIVATLTSFLLSLGAALLL
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=316, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=9e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 36676; Mature: 36676
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSGQHWPMAADLYGEMQLEANPPARRRWHDYLPGILVTAIAALAAAWLADHYAAPIVL CCCCCCCCCCHHHHHCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH MGLLIGLALSFLSQDVRTHAGLDLMSQTALRIGIVLVGARITAVQLAEMGPLPFLLLVAI HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH MLAVILVTVASAHLFAQDRHAALLAGGATAICGASAALALWSLIGDRRIDQARFTLTLVG HHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ITVASALAMTLYPVLAAELGLTDAQAGFLIGASIHDVAQAIGGGFSFSPQAGEVATIVKL HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHH TRVALLAPMLMLVALWLGRRGEAGARIPLRLPWFILGFLAVVAINSLVAIPRPVQAGAAT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GAQALLLLAIVATAMKARLHLLLDQGWQSFAPIIVATLTSFLLSLGAALLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKTSGQHWPMAADLYGEMQLEANPPARRRWHDYLPGILVTAIAALAAAWLADHYAAPIVL CCCCCCCCCCHHHHHCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH MGLLIGLALSFLSQDVRTHAGLDLMSQTALRIGIVLVGARITAVQLAEMGPLPFLLLVAI HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHH MLAVILVTVASAHLFAQDRHAALLAGGATAICGASAALALWSLIGDRRIDQARFTLTLVG HHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ITVASALAMTLYPVLAAELGLTDAQAGFLIGASIHDVAQAIGGGFSFSPQAGEVATIVKL HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHH TRVALLAPMLMLVALWLGRRGEAGARIPLRLPWFILGFLAVVAINSLVAIPRPVQAGAAT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GAQALLLLAIVATAMKARLHLLLDQGWQSFAPIIVATLTSFLLSLGAALLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]