Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488367

Identifier: 103488367

GI number: 103488367

Start: 3041530

End: 3042060

Strand: Reverse

Name: 103488367

Synonym: Sala_2890

Alternate gene names: NA

Gene position: 3042060-3041530 (Counterclockwise)

Preceding gene: 103488368

Following gene: 103488366

Centisome position: 90.94

GC content: 67.42

Gene sequence:

>531_bases
ATGATCAAGCGCCTGATCTCGCTGCTGTTCCTCGTCTGGGTGCTGGGCTTCGCCTGGTTCGCGCTGCTCCTGCCGCTGCC
CGCGCCGCCGCAGAAGACGGACGCGATCGTCGTCGTCACCGGCGGTCCGGGCCGCATCGACCGTGCGCTCGAACGGCTCG
AGGCCGGCGACGCGAAGCGCCTCCTGATCAGCGGCGTCGCGCGCGAGGTCAAGCCGCGCGAGCTTGCCGCCGAATATGGG
CGTCCGGTGGCGTTGTTCGACTGCTGTATCGCGCTGGGGTTCGACGCCGAGGACACACGCTCGAACGCCACCGAGGTCGC
GGCATGGGCCAAGCGGCGCAAGTACAAGAGCATCCGGCTCGTCACAACCGACTGGCACATGCGCCGCGCCGAATATGAAA
TCGGCCGCGCGGTGGGTCGCGATGTCACGATCGTAACCGACGCGGTGCGTAGCCAACCCAATCTGGCGACGCTGTTCCGC
GAATATCACAAATATCTCGCGGGGCTGGCGGGCGGCCTGCTCGGGCTTTAG

Upstream 100 bases:

>100_bases
TCACCGGCTGGGCGCTCTTGCTGGCGCTGCCGCTATTGGCTATCGCGCTCGCTGCCCTGACGGCGCGCCAGACGCTGCTC
GCCGCGCTGAAGAAGATGCT

Downstream 100 bases:

>100_bases
GAGCGGCGCCAATGCGCTACACCATCGCCTTGCTCCGCTCGATCCTCTTCTGGCTGCTCTTCGTCCTGATGAGCAGCGTC
GCATCGATCGGCGCCGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MIKRLISLLFLVWVLGFAWFALLLPLPAPPQKTDAIVVVTGGPGRIDRALERLEAGDAKRLLISGVAREVKPRELAAEYG
RPVALFDCCIALGFDAEDTRSNATEVAAWAKRRKYKSIRLVTTDWHMRRAEYEIGRAVGRDVTIVTDAVRSQPNLATLFR
EYHKYLAGLAGGLLGL

Sequences:

>Translated_176_residues
MIKRLISLLFLVWVLGFAWFALLLPLPAPPQKTDAIVVVTGGPGRIDRALERLEAGDAKRLLISGVAREVKPRELAAEYG
RPVALFDCCIALGFDAEDTRSNATEVAAWAKRRKYKSIRLVTTDWHMRRAEYEIGRAVGRDVTIVTDAVRSQPNLATLFR
EYHKYLAGLAGGLLGL
>Mature_176_residues
MIKRLISLLFLVWVLGFAWFALLLPLPAPPQKTDAIVVVTGGPGRIDRALERLEAGDAKRLLISGVAREVKPRELAAEYG
RPVALFDCCIALGFDAEDTRSNATEVAAWAKRRKYKSIRLVTTDWHMRRAEYEIGRAVGRDVTIVTDAVRSQPNLATLFR
EYHKYLAGLAGGLLGL

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19531; Mature: 19531

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRLISLLFLVWVLGFAWFALLLPLPAPPQKTDAIVVVTGGPGRIDRALERLEAGDAKR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHH
LLISGVAREVKPRELAAEYGRPVALFDCCIALGFDAEDTRSNATEVAAWAKRRKYKSIRL
HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHCCEEE
VTTDWHMRRAEYEIGRAVGRDVTIVTDAVRSQPNLATLFREYHKYLAGLAGGLLGL
EECHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKRLISLLFLVWVLGFAWFALLLPLPAPPQKTDAIVVVTGGPGRIDRALERLEAGDAKR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHH
LLISGVAREVKPRELAAEYGRPVALFDCCIALGFDAEDTRSNATEVAAWAKRRKYKSIRL
HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHCCEEE
VTTDWHMRRAEYEIGRAVGRDVTIVTDAVRSQPNLATLFREYHKYLAGLAGGLLGL
EECHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA