| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488327
Identifier: 103488327
GI number: 103488327
Start: 3000185
End: 3000583
Strand: Reverse
Name: 103488327
Synonym: Sala_2850
Alternate gene names: NA
Gene position: 3000583-3000185 (Counterclockwise)
Preceding gene: 103488328
Following gene: 103488319
Centisome position: 89.7
GC content: 62.66
Gene sequence:
>399_bases ATGAGCGCGCATCCCGGCCTCACCGCCTGGCACGCCTATATGGCGGACGGCGGCGATCCGCAGCGGTTGCGGAGCTTGCT CGCCGACGATGCGGTCTTTCATTCGCCGGTCGTCCACACCCCGCAGGAAGGCGGCGACAAGGTTTTCGCCTATCTCCACG CGGCGAGCCACGTTCTGGGCGGCGAGCATTTCCGCTATTTGCGCGAAATCGTCGATGGCGATCAGGCTTGCCTCGAATTT CAGACCGAGCTCGACGGCATTCAGATCAACGGCGTCGACATCATCCGCTGGAACGACGCGGGCAAAATCGAGGATTTCAA GGTGATGGTGCGCCCGCTCAAGGCCATCAACAAGGTCTGGGAAAAAATGGCCGCGATGCTCGCGGCGCAGGCGGGCTAG
Upstream 100 bases:
>100_bases TCGACCATGGTTTCGCCGCGACGATGGGCAATCGCCGCAACGACGAAGGCGCGAGGCTCGCCGACGCTCGCACCCGCGCC TTTTTCGCCGAGCATCTGGC
Downstream 100 bases:
>100_bases ATCAGGCTGAGCCCGGCGAGTTCGCGATAGAGTTCGGGCGGCAGCTCGTCGATGCCGCTTCCATCCTCCAGCCCCTTGGG CGCGTCGGCATCGGCCAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NADH Flavin Oxidoreductase/NADH Oxidase
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MSAHPGLTAWHAYMADGGDPQRLRSLLADDAVFHSPVVHTPQEGGDKVFAYLHAASHVLGGEHFRYLREIVDGDQACLEF QTELDGIQINGVDIIRWNDAGKIEDFKVMVRPLKAINKVWEKMAAMLAAQAG
Sequences:
>Translated_132_residues MSAHPGLTAWHAYMADGGDPQRLRSLLADDAVFHSPVVHTPQEGGDKVFAYLHAASHVLGGEHFRYLREIVDGDQACLEF QTELDGIQINGVDIIRWNDAGKIEDFKVMVRPLKAINKVWEKMAAMLAAQAG >Mature_131_residues SAHPGLTAWHAYMADGGDPQRLRSLLADDAVFHSPVVHTPQEGGDKVFAYLHAASHVLGGEHFRYLREIVDGDQACLEFQ TELDGIQINGVDIIRWNDAGKIEDFKVMVRPLKAINKVWEKMAAMLAAQAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14567; Mature: 14436
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHPGLTAWHAYMADGGDPQRLRSLLADDAVFHSPVVHTPQEGGDKVFAYLHAASHVLG CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC GEHFRYLREIVDGDQACLEFQTELDGIQINGVDIIRWNDAGKIEDFKVMVRPLKAINKVW HHHHHHHHHHHCCHHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHH EKMAAMLAAQAG HHHHHHHHHCCC >Mature Secondary Structure SAHPGLTAWHAYMADGGDPQRLRSLLADDAVFHSPVVHTPQEGGDKVFAYLHAASHVLG CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC GEHFRYLREIVDGDQACLEFQTELDGIQINGVDIIRWNDAGKIEDFKVMVRPLKAINKVW HHHHHHHHHHHCCHHHHHHHHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHH EKMAAMLAAQAG HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA