| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488193
Identifier: 103488193
GI number: 103488193
Start: 2863914
End: 2865995
Strand: Direct
Name: 103488193
Synonym: Sala_2716
Alternate gene names: NA
Gene position: 2863914-2865995 (Clockwise)
Preceding gene: 103488186
Following gene: 103488201
Centisome position: 85.61
GC content: 65.85
Gene sequence:
>2082_bases TTGCCAGCTTGCTGGCTCAGTCGCAGCGGGTGGGGGCCATCGGCCTTGCGCAAGGCCGATGGCCCCCGCCCCAACCCCTC CCCTGAAGGAGAGGGGCTTTCTCTGGACCTCCACCTTCATCCCTGTCTAAAGAATGCCACCATGAAAACAGCACCGTTCG TCGCCGCCGTGCTCCTGGCCGCCCCGCTCGTCCTTGTCACCGCCGCGTCAGCGCAAGACGGCAACAGCCGCCCGCAACCG GTCGTCCAGCCGCTGACCATCCCGTTGCCCGCCGACCGGCCCTATCCGGGCACGATGCAGCTTCGCGTCGATGCGACCGA CGTCGCGCGGGGCATTTTTCATGTCCGCCAGACGATCCCCGTCGCAAAACCCGGCAAGCTGACTTTGCTCTATCCCCAAT GGCTGCCCGGCAAACATGCGCCGCGCGGCGCGATCGCCGAGATGGCGGGCTTCACCGCGTCGGCGGGCGGCAAGCCGCTC GCCTGGACGCGCCAGCCGACCGACGTTTATGCGTTCGACATCGACGTGCCCGCAGGCACGAAGAGCATCGAGGTCGCGTT CGATTTCCTGTCGCCGACGCGCAGCAGCGAAGGCCGCGTCGTCGTCACCCCGGCGATGATGAATTTGCAGTGGGAGCAGG TGAGCCTCTATCCCGCGGGCTGGTTCACGCGGAACATCCCGGTGCAGCTCGACGTGACGCTGCCCGAAGGCTGGACCGGC GTGGCGGCGCTCGACGGGCTCAAGACCAGCGGCAATCGCTACAGCTATGCGCCGACGAATTACGAGGTGCTGATCGACAG CCCCATGTTCGCGGGACGCCATTTCCGCAAATGGGATCTGGGCCACAATGTCACGCTCAACGTCGTCGCCGATGAGCCGC ACTATCTCGCCGCCAGCCCCGACCATATCGCGCGCCACGCCGCGCTGGTGGCAGAAGCGGTGGCGCTGTTCGGCTCCCGT CCTTTCGACCGCTACGAGTTTCTGCTCGCGCTCACCGACGAACTCGGCGGCATCGGGCTCGAGCATCACCGGTCGAGCGA GAACAGCCGCGCGGTCGATTATTTCACCAAATGGGACGAGAATGACTGGGAGCGCGGTCTGCTCCCGCACGAACTGGTCC ATAGCTGGAACGGCAAATACCGCCGTCCCGACAAGCTGTGGACCCCCGATTATCGCACGCCGATGCAGGACAATCTGCTG TGGGTGTACGAAGGCCAGACGAGCTATTGGGATCTCGTCCTCGCGGGCCGGTCGGGGATGCAGTCGAAAGAGACGATCCT CGGCGAATGGGCGAGCCATGCCGCCAACTACAGCGTTCAGCCGGGGCGCCGCTGGCGCTCGGTCGAGGACACCACACTCG ACCCGATCATCGCCGCGCGCAAGCCCAAGCCCTTCGCGAGCTGGTCGCGGACCGAGGATTATTACAACGAAGGATCGCTG ATGTGGCTGGAGGCCGACATGCTGATCCGCGGCGCCACGAACAATCGCAAAAGCCTCGACGATTTTGCGCGCGCCTTTTT CGGCGGGCGCGAGGGCGACTGGGGGCAGGTGACATATGATTTCGGCGATGTCGTCGCGGCGCTGAACGCGGTCCACGCTT ATGACTGGGAACGTTTCCTGCGCGACCGGATGCAGGCGTCAGGCCGCCCCGCGCCCACCGGCGGGATCGAGCGTGCGGGT TATCGCCTCGTGTGGCGCGACACGCCGAACGCCTATGACCGCGACCGGATGGCGCAGGGGAAAAATGTCGACCTCACCCA TTCGCTCGGCCTGACGATCGACAAGGACGGGATTGCGGGCAATATCTTGTGGGACGGCCCGGCCTTCCGCGCCGATATCG TCAACGGGACCAGGATCGTCGCGGTCGACGGTGTCGCCTATGGCAAGGAGCGGATCGAAGCGGCGATCAAGGCTGCGGCG AGCGACAGCAAGACGCCGGTGCGCCTGCTCGTCGAGCGTGGCGGGCGCTATCGCACGGTCGAGATCGCCTATCATGGCGG GCTGCGCTGGCCGCATCTGGAAAAGGTCGCGGACACGCCCGACGGGTTCGACCGGCTGTTCGCGCCGAAACGCGCACTCT AG
Upstream 100 bases:
>100_bases CTGGCGGGCTTGTCCTTGCTCATGGCGGCGGCGTCTAGTCGATTTTGGGGAGAGCGCAAAGGGCTACAAAGCCCTCTCCT TCAGGGGAGGGCAGCGAGAC
Downstream 100 bases:
>100_bases GCGCCCGGCCGTCGCGCCCGCCCGAACGCCAGCCCGACGAGCGCGCCGAGCGCCGCGAGCGCCATATCCTTTTGCGCGTC CCACAGATCGCCCTGTTGCC
Product: peptidase M61
Products: NA
Alternate protein names: Peptidase M; Protease; Glycyl Aminopeptidase; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Glycyl Aminopeptidase Protein; PDZ Domain Family Protein; Trypsin-Like Serine Protease; Protease With C-Terminal PDZ Domain-Containing Protein; Aminoglycoside Phosphotransferase; Aminopeptidase N Family Protein; Protease With C-Terminal PDZ Domain; Metallopeptidase; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein; PDZ Domain-Containing Protein
Number of amino acids: Translated: 693; Mature: 692
Protein sequence:
>693_residues MPACWLSRSGWGPSALRKADGPRPNPSPEGEGLSLDLHLHPCLKNATMKTAPFVAAVLLAAPLVLVTAASAQDGNSRPQP VVQPLTIPLPADRPYPGTMQLRVDATDVARGIFHVRQTIPVAKPGKLTLLYPQWLPGKHAPRGAIAEMAGFTASAGGKPL AWTRQPTDVYAFDIDVPAGTKSIEVAFDFLSPTRSSEGRVVVTPAMMNLQWEQVSLYPAGWFTRNIPVQLDVTLPEGWTG VAALDGLKTSGNRYSYAPTNYEVLIDSPMFAGRHFRKWDLGHNVTLNVVADEPHYLAASPDHIARHAALVAEAVALFGSR PFDRYEFLLALTDELGGIGLEHHRSSENSRAVDYFTKWDENDWERGLLPHELVHSWNGKYRRPDKLWTPDYRTPMQDNLL WVYEGQTSYWDLVLAGRSGMQSKETILGEWASHAANYSVQPGRRWRSVEDTTLDPIIAARKPKPFASWSRTEDYYNEGSL MWLEADMLIRGATNNRKSLDDFARAFFGGREGDWGQVTYDFGDVVAALNAVHAYDWERFLRDRMQASGRPAPTGGIERAG YRLVWRDTPNAYDRDRMAQGKNVDLTHSLGLTIDKDGIAGNILWDGPAFRADIVNGTRIVAVDGVAYGKERIEAAIKAAA SDSKTPVRLLVERGGRYRTVEIAYHGGLRWPHLEKVADTPDGFDRLFAPKRAL
Sequences:
>Translated_693_residues MPACWLSRSGWGPSALRKADGPRPNPSPEGEGLSLDLHLHPCLKNATMKTAPFVAAVLLAAPLVLVTAASAQDGNSRPQP VVQPLTIPLPADRPYPGTMQLRVDATDVARGIFHVRQTIPVAKPGKLTLLYPQWLPGKHAPRGAIAEMAGFTASAGGKPL AWTRQPTDVYAFDIDVPAGTKSIEVAFDFLSPTRSSEGRVVVTPAMMNLQWEQVSLYPAGWFTRNIPVQLDVTLPEGWTG VAALDGLKTSGNRYSYAPTNYEVLIDSPMFAGRHFRKWDLGHNVTLNVVADEPHYLAASPDHIARHAALVAEAVALFGSR PFDRYEFLLALTDELGGIGLEHHRSSENSRAVDYFTKWDENDWERGLLPHELVHSWNGKYRRPDKLWTPDYRTPMQDNLL WVYEGQTSYWDLVLAGRSGMQSKETILGEWASHAANYSVQPGRRWRSVEDTTLDPIIAARKPKPFASWSRTEDYYNEGSL MWLEADMLIRGATNNRKSLDDFARAFFGGREGDWGQVTYDFGDVVAALNAVHAYDWERFLRDRMQASGRPAPTGGIERAG YRLVWRDTPNAYDRDRMAQGKNVDLTHSLGLTIDKDGIAGNILWDGPAFRADIVNGTRIVAVDGVAYGKERIEAAIKAAA SDSKTPVRLLVERGGRYRTVEIAYHGGLRWPHLEKVADTPDGFDRLFAPKRAL >Mature_692_residues PACWLSRSGWGPSALRKADGPRPNPSPEGEGLSLDLHLHPCLKNATMKTAPFVAAVLLAAPLVLVTAASAQDGNSRPQPV VQPLTIPLPADRPYPGTMQLRVDATDVARGIFHVRQTIPVAKPGKLTLLYPQWLPGKHAPRGAIAEMAGFTASAGGKPLA WTRQPTDVYAFDIDVPAGTKSIEVAFDFLSPTRSSEGRVVVTPAMMNLQWEQVSLYPAGWFTRNIPVQLDVTLPEGWTGV AALDGLKTSGNRYSYAPTNYEVLIDSPMFAGRHFRKWDLGHNVTLNVVADEPHYLAASPDHIARHAALVAEAVALFGSRP FDRYEFLLALTDELGGIGLEHHRSSENSRAVDYFTKWDENDWERGLLPHELVHSWNGKYRRPDKLWTPDYRTPMQDNLLW VYEGQTSYWDLVLAGRSGMQSKETILGEWASHAANYSVQPGRRWRSVEDTTLDPIIAARKPKPFASWSRTEDYYNEGSLM WLEADMLIRGATNNRKSLDDFARAFFGGREGDWGQVTYDFGDVVAALNAVHAYDWERFLRDRMQASGRPAPTGGIERAGY RLVWRDTPNAYDRDRMAQGKNVDLTHSLGLTIDKDGIAGNILWDGPAFRADIVNGTRIVAVDGVAYGKERIEAAIKAAAS DSKTPVRLLVERGGRYRTVEIAYHGGLRWPHLEKVADTPDGFDRLFAPKRAL
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76927; Mature: 76795
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPACWLSRSGWGPSALRKADGPRPNPSPEGEGLSLDLHLHPCLKNATMKTAPFVAAVLLA CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH APLVLVTAASAQDGNSRPQPVVQPLTIPLPADRPYPGTMQLRVDATDVARGIFHVRQTIP CCHHEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCC VAKPGKLTLLYPQWLPGKHAPRGAIAEMAGFTASAGGKPLAWTRQPTDVYAFDIDVPAGT CCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEECCCCC KSIEVAFDFLSPTRSSEGRVVVTPAMMNLQWEQVSLYPAGWFTRNIPVQLDVTLPEGWTG CEEEEEEEECCCCCCCCCEEEEECHHHCEEEEEEEEEECCCEECCCCEEEEEECCCCCCC VAALDGLKTSGNRYSYAPTNYEVLIDSPMFAGRHFRKWDLGHNVTLNVVADEPHYLAASP HHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEECCCCEEECCH DHIARHAALVAEAVALFGSRPFDRYEFLLALTDELGGIGLEHHRSSENSRAVDYFTKWDE HHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEHHHHCCCCCHHCCCCCCCCEEEEEECCCC NDWERGLLPHELVHSWNGKYRRPDKLWTPDYRTPMQDNLLWVYEGQTSYWDLVLAGRSGM CCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCC QSKETILGEWASHAANYSVQPGRRWRSVEDTTLDPIIAARKPKPFASWSRTEDYYNEGSL CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHCCCCE MWLEADMLIRGATNNRKSLDDFARAFFGGREGDWGQVTYDFGDVVAALNAVHAYDWERFL EEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH RDRMQASGRPAPTGGIERAGYRLVWRDTPNAYDRDRMAQGKNVDLTHSLGLTIDKDGIAG HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCEEEEECCCEEECCCCEE NILWDGPAFRADIVNGTRIVAVDGVAYGKERIEAAIKAAASDSKTPVRLLVERGGRYRTV EEEECCCCCEEEECCCEEEEEECCCHHCHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEE EIAYHGGLRWPHLEKVADTPDGFDRLFAPKRAL EEEEECCCCCCCHHHHCCCCCCHHHHCCCCCCC >Mature Secondary Structure PACWLSRSGWGPSALRKADGPRPNPSPEGEGLSLDLHLHPCLKNATMKTAPFVAAVLLA CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH APLVLVTAASAQDGNSRPQPVVQPLTIPLPADRPYPGTMQLRVDATDVARGIFHVRQTIP CCHHEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCC VAKPGKLTLLYPQWLPGKHAPRGAIAEMAGFTASAGGKPLAWTRQPTDVYAFDIDVPAGT CCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCEEEEEEEECCCCC KSIEVAFDFLSPTRSSEGRVVVTPAMMNLQWEQVSLYPAGWFTRNIPVQLDVTLPEGWTG CEEEEEEEECCCCCCCCCEEEEECHHHCEEEEEEEEEECCCEECCCCEEEEEECCCCCCC VAALDGLKTSGNRYSYAPTNYEVLIDSPMFAGRHFRKWDLGHNVTLNVVADEPHYLAASP HHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEECCCCEEECCH DHIARHAALVAEAVALFGSRPFDRYEFLLALTDELGGIGLEHHRSSENSRAVDYFTKWDE HHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEHHHHCCCCCHHCCCCCCCCEEEEEECCCC NDWERGLLPHELVHSWNGKYRRPDKLWTPDYRTPMQDNLLWVYEGQTSYWDLVLAGRSGM CCHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCC QSKETILGEWASHAANYSVQPGRRWRSVEDTTLDPIIAARKPKPFASWSRTEDYYNEGSL CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHCCCCE MWLEADMLIRGATNNRKSLDDFARAFFGGREGDWGQVTYDFGDVVAALNAVHAYDWERFL EEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH RDRMQASGRPAPTGGIERAGYRLVWRDTPNAYDRDRMAQGKNVDLTHSLGLTIDKDGIAG HHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCEEEEECCCEEECCCCEE NILWDGPAFRADIVNGTRIVAVDGVAYGKERIEAAIKAAASDSKTPVRLLVERGGRYRTV EEEECCCCCEEEECCCEEEEEECCCHHCHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEE EIAYHGGLRWPHLEKVADTPDGFDRLFAPKRAL EEEEECCCCCCCHHHHCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA