| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488058
Identifier: 103488058
GI number: 103488058
Start: 2722679
End: 2723023
Strand: Direct
Name: 103488058
Synonym: Sala_2580
Alternate gene names: NA
Gene position: 2722679-2723023 (Clockwise)
Preceding gene: 103488057
Following gene: 103488059
Centisome position: 81.39
GC content: 62.32
Gene sequence:
>345_bases ATGACTGAGCCAATCAAGCTGCTGCGGATCTACACCGACGAGGGCGCCTATCTTGGCGATCGCCGGGTGTTCGAAGTCAT TTCATCCCGGGCGAGGGACGCGGGCCTGGCCGGCGTCACGGTGCTGGAGGCGCGGTTGGGGTTCGGCCGCTCGGCGCACA TGCACCGGCGCCATGTCTTCGAAAACGACCGGGCGCTCCTCATTGAGATCGTCGACGAGGAAACGAAGCTGAGAAGCTTC GCTTTTGCGCTCGACGACATCCCCGACATCGGACTGATGACACTGGAGCCGGTGGAAATTCTTGGCGGGAAGGCCAAGCA GGGACTGCCGGGTACAAATCCGTGA
Upstream 100 bases:
>100_bases CGATCGCGAAAGTTGTGCTCGGTGCAACCGAAGGAAGGCGCCGCAAGCGCGAAGAACAAGTCGAGCCGACCACACCCGAG CCGGCGTGAAGGAGAAGATC
Downstream 100 bases:
>100_bases CCGGCATCGGCTCCCCACCCCAATCGCACGAACCTGCAAGCCTCGCGCATCGAAGGCGGCACTGCCTTCGAGCGTCTGAC ATGGCGGCCGGCGCAACACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MTEPIKLLRIYTDEGAYLGDRRVFEVISSRARDAGLAGVTVLEARLGFGRSAHMHRRHVFENDRALLIEIVDEETKLRSF AFALDDIPDIGLMTLEPVEILGGKAKQGLPGTNP
Sequences:
>Translated_114_residues MTEPIKLLRIYTDEGAYLGDRRVFEVISSRARDAGLAGVTVLEARLGFGRSAHMHRRHVFENDRALLIEIVDEETKLRSF AFALDDIPDIGLMTLEPVEILGGKAKQGLPGTNP >Mature_113_residues TEPIKLLRIYTDEGAYLGDRRVFEVISSRARDAGLAGVTVLEARLGFGRSAHMHRRHVFENDRALLIEIVDEETKLRSFA FALDDIPDIGLMTLEPVEILGGKAKQGLPGTNP
Specific function: Unknown
COG id: COG1993
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12647; Mature: 12516
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPIKLLRIYTDEGAYLGDRRVFEVISSRARDAGLAGVTVLEARLGFGRSAHMHRRHVF CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHC ENDRALLIEIVDEETKLRSFAFALDDIPDIGLMTLEPVEILGGKAKQGLPGTNP CCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCEEECHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TEPIKLLRIYTDEGAYLGDRRVFEVISSRARDAGLAGVTVLEARLGFGRSAHMHRRHVF CCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHC ENDRALLIEIVDEETKLRSFAFALDDIPDIGLMTLEPVEILGGKAKQGLPGTNP CCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCEEECHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA