| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cusB [H]
Identifier: 103488027
GI number: 103488027
Start: 2687221
End: 2688693
Strand: Direct
Name: cusB [H]
Synonym: Sala_2549
Alternate gene names: 103488027
Gene position: 2687221-2688693 (Clockwise)
Preceding gene: 103488026
Following gene: 103488028
Centisome position: 80.33
GC content: 67.41
Gene sequence:
>1473_bases ATGAAGCACGCACTTTCCGCGCGGGCGCGGCTCCTTCTGGCCGCAGCGGCGATTGCCCTGGTCGGGGGTGCCGTTGGCTA TGGCGTGGCCAGCTTGAGCGGCACCGGGCCGGCAGCCGAGAGGACCGAAGGGGACCGCAAGGTGCTCTACTGGTATGACC CCATGTATCCCAACCAGCATTTCGACAAGCCCGGCAAGTCGCCGTTCATGGATATGGAGCTCGTCCCCAAATATGCCGAT GAGGCAACAAGCGAGGCAGGGGTGCGCATCGATCCGGCGCTCGTCCAGAATCTGGGCGTGCGCACGGCCGAGGTCCGCCG CGGCACGCTGGGCGGCGGCCTCTCGGCCACAGGCGTCATCGGCTATAACGAGCGCGAGATAGCGATTGTCCAGCCGCGCG CCGGCGGCTTTGTCCAGCGGACCTATGGGCGGGCGCCCGATGACGTGATCGAAGCAGGCGCGCCGCTGGTCGATCTGCTT GTGCCGGACTGGGGCGGCGCACAGGCCGAGTTCCTGGCGGTGCTGCGCACGGGCGACAGGGCCCTGGCAAGCGCCGCGCG CCAAAGGCTGGTGCTGCTCGGCATGCCGCAATCCACCATTGCCGCCGTCGAACGCAGTGGCAGGCAGCGCAATGTCATTA CCATCAACTCGCCGATTGGCGGGACGATCAAGTCGCTCGGCGTGCGGCAGGGTATGAGCGTGATGGCGGGGCAAACGCTC GCCGAAGTAAACGGGCTCGGCACGGTGTGGCTCGATGCCGCGGTCCCCGAAGCCATGGCGGGACGATTGCGGCCGGACAT GCCGGTGACGGCGACGCTGGCAGCCTATCCGGGCGAGAGTTTTGCGGGCCGGATTCGGGCGATCCTGCCGCAGGCTGAAA CCGAAAGCCGGACCATCACCGCGCGCGTCGAGATCCCCAATCGCGGCGGGCGGCTGCGGCCAGGCATGTTCGCCACCGTC AGCTTCGCTGGCGAGCAGCGCCCCGCGCTGCTCGTACCCTCCGAGGCGCTGATCCGCACGGGCAAGCGCACGCTCGTCAT GCTGGCGTTGGATAAGGGACGCTATCAGCCGGCCGAAGTCAGAACGGGAATGGAAGCGGACGGCCAAACCGAAGTGCTCG CCGGACTTGCCGAGGGTGAGAAGGTCGTCACCTCGGGCCAGTTCCTGATCGATTCCGAAGCCAGTCTTTCGGCAATGCAG GCGCGGCCGATCGCGGGTGGTTCGCCGCAGGCGCCGTCCAAGGCTCAGGGCCACAGGGCTATCGGCACAATCGAAAAGAT CGAGCCCGGCAGCGTGACGCTGAGGCATGGGCCGGTCCCGTCGGCGAGTTGGCCCGCAATGACGATGCGCTTCCGGCTTG CCGATCCTGCAACGGTGCGCGGGTTCAAACCCGGCGACAAGGTGAACTTCACCTTCGACCAGCCTGCGCAAGGCCCGACC GTCCGCTCGATCACGCGCGAGAACGGCCGATGA
Upstream 100 bases:
>100_bases CCGAGGCGAGCCTCGCCCGGACAGAACTCGACGCACTCGACCGCGAGGCTGCTGTAGCCCGGCACGAAGCGCGCCTGACG TTGACCTACGGAGACGATCG
Downstream 100 bases:
>100_bases TCGCGCGGCTCATCCATTGGTCGGTCCAGAACCGCTTCTTCATATTGCTGGGCGCGCTGGCCTTGGTGTTCGCGGGGCTC TGGGCGGTGCGAACGACACC
Product: secretion protein HlyD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 490
Protein sequence:
>490_residues MKHALSARARLLLAAAAIALVGGAVGYGVASLSGTGPAAERTEGDRKVLYWYDPMYPNQHFDKPGKSPFMDMELVPKYAD EATSEAGVRIDPALVQNLGVRTAEVRRGTLGGGLSATGVIGYNEREIAIVQPRAGGFVQRTYGRAPDDVIEAGAPLVDLL VPDWGGAQAEFLAVLRTGDRALASAARQRLVLLGMPQSTIAAVERSGRQRNVITINSPIGGTIKSLGVRQGMSVMAGQTL AEVNGLGTVWLDAAVPEAMAGRLRPDMPVTATLAAYPGESFAGRIRAILPQAETESRTITARVEIPNRGGRLRPGMFATV SFAGEQRPALLVPSEALIRTGKRTLVMLALDKGRYQPAEVRTGMEADGQTEVLAGLAEGEKVVTSGQFLIDSEASLSAMQ ARPIAGGSPQAPSKAQGHRAIGTIEKIEPGSVTLRHGPVPSASWPAMTMRFRLADPATVRGFKPGDKVNFTFDQPAQGPT VRSITRENGR
Sequences:
>Translated_490_residues MKHALSARARLLLAAAAIALVGGAVGYGVASLSGTGPAAERTEGDRKVLYWYDPMYPNQHFDKPGKSPFMDMELVPKYAD EATSEAGVRIDPALVQNLGVRTAEVRRGTLGGGLSATGVIGYNEREIAIVQPRAGGFVQRTYGRAPDDVIEAGAPLVDLL VPDWGGAQAEFLAVLRTGDRALASAARQRLVLLGMPQSTIAAVERSGRQRNVITINSPIGGTIKSLGVRQGMSVMAGQTL AEVNGLGTVWLDAAVPEAMAGRLRPDMPVTATLAAYPGESFAGRIRAILPQAETESRTITARVEIPNRGGRLRPGMFATV SFAGEQRPALLVPSEALIRTGKRTLVMLALDKGRYQPAEVRTGMEADGQTEVLAGLAEGEKVVTSGQFLIDSEASLSAMQ ARPIAGGSPQAPSKAQGHRAIGTIEKIEPGSVTLRHGPVPSASWPAMTMRFRLADPATVRGFKPGDKVNFTFDQPAQGPT VRSITRENGR >Mature_490_residues MKHALSARARLLLAAAAIALVGGAVGYGVASLSGTGPAAERTEGDRKVLYWYDPMYPNQHFDKPGKSPFMDMELVPKYAD EATSEAGVRIDPALVQNLGVRTAEVRRGTLGGGLSATGVIGYNEREIAIVQPRAGGFVQRTYGRAPDDVIEAGAPLVDLL VPDWGGAQAEFLAVLRTGDRALASAARQRLVLLGMPQSTIAAVERSGRQRNVITINSPIGGTIKSLGVRQGMSVMAGQTL AEVNGLGTVWLDAAVPEAMAGRLRPDMPVTATLAAYPGESFAGRIRAILPQAETESRTITARVEIPNRGGRLRPGMFATV SFAGEQRPALLVPSEALIRTGKRTLVMLALDKGRYQPAEVRTGMEADGQTEVLAGLAEGEKVVTSGQFLIDSEASLSAMQ ARPIAGGSPQAPSKAQGHRAIGTIEKIEPGSVTLRHGPVPSASWPAMTMRFRLADPATVRGFKPGDKVNFTFDQPAQGPT VRSITRENGR
Specific function: Part of a cation efflux system that mediates resistance to copper and silver [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1786787, Length=386, Percent_Identity=42.2279792746114, Blast_Score=305, Evalue=3e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51771; Mature: 51771
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHALSARARLLLAAAAIALVGGAVGYGVASLSGTGPAAERTEGDRKVLYWYDPMYPNQH CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCC FDKPGKSPFMDMELVPKYADEATSEAGVRIDPALVQNLGVRTAEVRRGTLGGGLSATGVI CCCCCCCCCCCHHHCCHHHHHHHCCCCCEECHHHHHHCCCCCHHHHCCCCCCCCCEEEEE GYNEREIAIVQPRAGGFVQRTYGRAPDDVIEAGAPLVDLLVPDWGGAQAEFLAVLRTGDR ECCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHEEEEHHCCCH ALASAARQRLVLLGMPQSTIAAVERSGRQRNVITINSPIGGTIKSLGVRQGMSVMAGQTL HHHHHHHCEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHCCHH AEVNGLGTVWLDAAVPEAMAGRLRPDMPVTATLAAYPGESFAGRIRAILPQAETESRTIT HHHCCCCEEEEHHHCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHEECCCCCCCCEEEE ARVEIPNRGGRLRPGMFATVSFAGEQRPALLVPSEALIRTGKRTLVMLALDKGRYQPAEV EEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCHHHHHCCCEEEEEEEECCCCCCHHHH RTGMEADGQTEVLAGLAEGEKVVTSGQFLIDSEASLSAMQARPIAGGSPQAPSKAQGHRA HCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCH IGTIEKIEPGSVTLRHGPVPSASWPAMTMRFRLADPATVRGFKPGDKVNFTFDQPAQGPT HCCCEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCEECCCCCCCEEEEEECCCCCCCC VRSITRENGR CHHHHCCCCC >Mature Secondary Structure MKHALSARARLLLAAAAIALVGGAVGYGVASLSGTGPAAERTEGDRKVLYWYDPMYPNQH CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCC FDKPGKSPFMDMELVPKYADEATSEAGVRIDPALVQNLGVRTAEVRRGTLGGGLSATGVI CCCCCCCCCCCHHHCCHHHHHHHCCCCCEECHHHHHHCCCCCHHHHCCCCCCCCCEEEEE GYNEREIAIVQPRAGGFVQRTYGRAPDDVIEAGAPLVDLLVPDWGGAQAEFLAVLRTGDR ECCCCEEEEECCCCCCCHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHEEEEHHCCCH ALASAARQRLVLLGMPQSTIAAVERSGRQRNVITINSPIGGTIKSLGVRQGMSVMAGQTL HHHHHHHCEEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHCCHH AEVNGLGTVWLDAAVPEAMAGRLRPDMPVTATLAAYPGESFAGRIRAILPQAETESRTIT HHHCCCCEEEEHHHCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHEECCCCCCCCEEEE ARVEIPNRGGRLRPGMFATVSFAGEQRPALLVPSEALIRTGKRTLVMLALDKGRYQPAEV EEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCHHHHHCCCEEEEEEEECCCCCCHHHH RTGMEADGQTEVLAGLAEGEKVVTSGQFLIDSEASLSAMQARPIAGGSPQAPSKAQGHRA HCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCH IGTIEKIEPGSVTLRHGPVPSASWPAMTMRFRLADPATVRGFKPGDKVNFTFDQPAQGPT HCCCEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCEECCCCCCCEEEEEECCCCCCCC VRSITRENGR CHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]