| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488003
Identifier: 103488003
GI number: 103488003
Start: 2660821
End: 2661471
Strand: Direct
Name: 103488003
Synonym: Sala_2524
Alternate gene names: NA
Gene position: 2660821-2661471 (Clockwise)
Preceding gene: 103488002
Following gene: 103488004
Centisome position: 79.54
GC content: 63.29
Gene sequence:
>651_bases ATGTGCAACCTGGTGACGCTGAATTCGACGGTCGACGAGGTGGCATCCTATTTTAAATCGCGCCGGCCGCAGGCCACCAA CGCCTCGCCCGGCGATGTCTATCCCGGCGGACAGGGTTTCGTGGTGAGGCAGGACGGCGGCGAACGCGTTCTTCAGGCCA TGACCTGGGGCTTCCCGGTGCGCCTCAAACATATGAAACCGACCAGCAAGCCGAAGCCGGTCAACAATGCGCGCGACGAC AAGCTGATGTCCTTCTGGCGCCCCTGGTTCACCAGCCCCGCACATCGCTGCCTCATCCCTTTCACCTCCTTCGCCGAAGC CGAAGGCGAGAAGGGCAAGATGACGCGAACCTGGATCAGCGTGACCGACCAGCCGCTCGCCGCATGGGCGGGTCTCTGGC GGCCGACCGACGAATGGGGCGATTGCTATACGGGCGTGATGGTCGATGCGACCGAGGAACTGTTCCACATCCATGATCGC ATGCCGGTCATCCTGCACCCCGAAGATCATGATGCCTGGCTTTATGCGCCTGCCGAAGAGGCGATGGCGCTGGTCGCAAA ATATCCCGCCGATCGCCTCGCCGTCGAGCGCACCGAAGTACCCTGGTTCAGCCGCAAGGCGCCGCCCGCGGATGCGCCAT CACTGCTCTGA
Upstream 100 bases:
>100_bases ACTTGCTGCGGCCCTTCCCCAAGGATAGCTTCAGGATCACGCCGCCGATCCAGCAGAATTTCGACGACCTACTCGGAGCG GCCTGACGGAGGGCCGCCCG
Downstream 100 bases:
>100_bases AAACGGGCGGTGTGCAGCCGGAATAGATCCAGAAGCGGGTCCGATTGTCAGACCCAAGCCCTTTACCCGGATTATCAACC TGTTACATCTCGCTGACCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MCNLVTLNSTVDEVASYFKSRRPQATNASPGDVYPGGQGFVVRQDGGERVLQAMTWGFPVRLKHMKPTSKPKPVNNARDD KLMSFWRPWFTSPAHRCLIPFTSFAEAEGEKGKMTRTWISVTDQPLAAWAGLWRPTDEWGDCYTGVMVDATEELFHIHDR MPVILHPEDHDAWLYAPAEEAMALVAKYPADRLAVERTEVPWFSRKAPPADAPSLL
Sequences:
>Translated_216_residues MCNLVTLNSTVDEVASYFKSRRPQATNASPGDVYPGGQGFVVRQDGGERVLQAMTWGFPVRLKHMKPTSKPKPVNNARDD KLMSFWRPWFTSPAHRCLIPFTSFAEAEGEKGKMTRTWISVTDQPLAAWAGLWRPTDEWGDCYTGVMVDATEELFHIHDR MPVILHPEDHDAWLYAPAEEAMALVAKYPADRLAVERTEVPWFSRKAPPADAPSLL >Mature_216_residues MCNLVTLNSTVDEVASYFKSRRPQATNASPGDVYPGGQGFVVRQDGGERVLQAMTWGFPVRLKHMKPTSKPKPVNNARDD KLMSFWRPWFTSPAHRCLIPFTSFAEAEGEKGKMTRTWISVTDQPLAAWAGLWRPTDEWGDCYTGVMVDATEELFHIHDR MPVILHPEDHDAWLYAPAEEAMALVAKYPADRLAVERTEVPWFSRKAPPADAPSLL
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24357; Mature: 24357
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNLVTLNSTVDEVASYFKSRRPQATNASPGDVYPGGQGFVVRQDGGERVLQAMTWGFPV CCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCE RLKHMKPTSKPKPVNNARDDKLMSFWRPWFTSPAHRCLIPFTSFAEAEGEKGKMTRTWIS EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCEEEEEEE VTDQPLAAWAGLWRPTDEWGDCYTGVMVDATEELFHIHDRMPVILHPEDHDAWLYAPAEE ECCCHHHHHHHCCCCCCCCCCEECCEEEECHHHHHHHHCCCCEEEECCCCCCEEEECHHH AMALVAKYPADRLAVERTEVPWFSRKAPPADAPSLL HHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MCNLVTLNSTVDEVASYFKSRRPQATNASPGDVYPGGQGFVVRQDGGERVLQAMTWGFPV CCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCE RLKHMKPTSKPKPVNNARDDKLMSFWRPWFTSPAHRCLIPFTSFAEAEGEKGKMTRTWIS EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCEEEEEEE VTDQPLAAWAGLWRPTDEWGDCYTGVMVDATEELFHIHDRMPVILHPEDHDAWLYAPAEE ECCCHHHHHHHCCCCCCCCCCEECCEEEECHHHHHHHHCCCCEEEECCCCCCEEEECHHH AMALVAKYPADRLAVERTEVPWFSRKAPPADAPSLL HHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA