Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487908

Identifier: 103487908

GI number: 103487908

Start: 2564918

End: 2565595

Strand: Direct

Name: 103487908

Synonym: Sala_2428

Alternate gene names: NA

Gene position: 2564918-2565595 (Clockwise)

Preceding gene: 103487907

Following gene: 103487909

Centisome position: 76.68

GC content: 62.54

Gene sequence:

>678_bases
ATGCCCGACCCGAAACCCGTAGCAAGATCCTACACGCCAGCGGCAGGATATCACTTCCTGACGCCCTTTTATGATTTCGG
CGTCGCGGTGACGACGCGCGAGCGCGTGTGGCGCGACCGTCTCGTTCGCCATATGGCGCTCGGCGAGGGTGACGTCATTC
TCGATATCGGCTCGGGTACGGGAAATCTCGCGCTGGCGATCGCTCGCCATAGCCGGGACGTCCGCTATCTTGGTTTCGAC
CCCGACGAGGCCGCGACGCGAATTGCCCGAACGAAGACCGCGCAGATTGTTCCACCGCCGGAGTTTCGAGTTGGCTTTTT
CGCGGCTTCGGCGATCGATGACTGGCCCTCGCCTTCCAAGATTGCGATCTGCCTCGTCCTTCATCAGGTCGGGCTTGAGG
AAAAGGCACGTCTGCTACGCGAGGCCCGGCAGGTGCTCGCGCCGGGCGGCAAACTCTATGTCACCGACTATGGAGAACAG
CGCAGCCGCCTCATGCGGTTGCTGTTCCGCCTGACGATCCAGCAGCTCGACGGCGTCCAGGACACCCAACCCAACGCCGA
TGGATTGCTCCCGGTGCTGATGAGAGAGGCAGGCTTTTGCGATGTTCGCGAACTTGAGACGTTCCGCACGCCAACCGGTG
CGATCGCGATCATCGAGGCCCGAAAGCCCGGGACCTGA

Upstream 100 bases:

>100_bases
ATTCAAGACCGCCGCGCCTGCTTGCCCCTAAGCGTCTCCTCGAGACCGGCGAGTGCGGCCGCAATCCGGCGGCAAGCCAA
AGCGTCGAAAGGAGACGGCC

Downstream 100 bases:

>100_bases
CGGCACAGGGCAAAGAAAATCCAAGGGATAATCGCCTTTCTTGCGTATCGATAGAAGCGGCTCCATTCTGGAACCGCCAG
GAACGACGCCAGCGGCGAAC

Product: methyltransferase type 12

Products: NA

Alternate protein names: Ubiquinone/Menaquinone Biosynthesis Methyltransferase; Methyltransferase

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPDPKPVARSYTPAAGYHFLTPFYDFGVAVTTRERVWRDRLVRHMALGEGDVILDIGSGTGNLALAIARHSRDVRYLGFD
PDEAATRIARTKTAQIVPPPEFRVGFFAASAIDDWPSPSKIAICLVLHQVGLEEKARLLREARQVLAPGGKLYVTDYGEQ
RSRLMRLLFRLTIQQLDGVQDTQPNADGLLPVLMREAGFCDVRELETFRTPTGAIAIIEARKPGT

Sequences:

>Translated_225_residues
MPDPKPVARSYTPAAGYHFLTPFYDFGVAVTTRERVWRDRLVRHMALGEGDVILDIGSGTGNLALAIARHSRDVRYLGFD
PDEAATRIARTKTAQIVPPPEFRVGFFAASAIDDWPSPSKIAICLVLHQVGLEEKARLLREARQVLAPGGKLYVTDYGEQ
RSRLMRLLFRLTIQQLDGVQDTQPNADGLLPVLMREAGFCDVRELETFRTPTGAIAIIEARKPGT
>Mature_224_residues
PDPKPVARSYTPAAGYHFLTPFYDFGVAVTTRERVWRDRLVRHMALGEGDVILDIGSGTGNLALAIARHSRDVRYLGFDP
DEAATRIARTKTAQIVPPPEFRVGFFAASAIDDWPSPSKIAICLVLHQVGLEEKARLLREARQVLAPGGKLYVTDYGEQR
SRLMRLLFRLTIQQLDGVQDTQPNADGLLPVLMREAGFCDVRELETFRTPTGAIAIIEARKPGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24971; Mature: 24840

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPKPVARSYTPAAGYHFLTPFYDFGVAVTTRERVWRDRLVRHMALGEGDVILDIGSGT
CCCCCCCCCCCCCCCCCHHHCHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCC
GNLALAIARHSRDVRYLGFDPDEAATRIARTKTAQIVPPPEFRVGFFAASAIDDWPSPSK
CCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEHEEEHHHHCCCCCCCH
IAICLVLHQVGLEEKARLLREARQVLAPGGKLYVTDYGEQRSRLMRLLFRLTIQQLDGVQ
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
DTQPNADGLLPVLMREAGFCDVRELETFRTPTGAIAIIEARKPGT
CCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
PDPKPVARSYTPAAGYHFLTPFYDFGVAVTTRERVWRDRLVRHMALGEGDVILDIGSGT
CCCCCCCCCCCCCCCCHHHCHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCC
GNLALAIARHSRDVRYLGFDPDEAATRIARTKTAQIVPPPEFRVGFFAASAIDDWPSPSK
CCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEHEEEHHHHCCCCCCCH
IAICLVLHQVGLEEKARLLREARQVLAPGGKLYVTDYGEQRSRLMRLLFRLTIQQLDGVQ
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
DTQPNADGLLPVLMREAGFCDVRELETFRTPTGAIAIIEARKPGT
CCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA