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The map label for this gene is yaiC [C]

Identifier: 103487844

GI number: 103487844

Start: 2488624

End: 2489268

Strand: Direct

Name: yaiC [C]

Synonym: Sala_2363

Alternate gene names: 103487844

Gene position: 2488624-2489268 (Clockwise)

Preceding gene: 103487835

Following gene: 103487845

Centisome position: 74.39

GC content: 64.65

Gene sequence:

>645_bases
ATGGACAGCGTAGGGGGGGCACGGATCGCGGTAGACCAGTTTGCCGCCGTTTCCGTCGACTCCATCGAGGATCAGTTGCG
CGAATTGCGCCGCGAACGCGATGCCTTGCGCCGCGAGAATCGTGTGCTGAAGATCGCGGTTGCCGAACTCGAGCGCGTGT
CCGAACGCGACACGCTGACCCCCCTGTTCAACCGTCGCTATTTCCTGACCGCGATCCATCACCGCATGGCGCGCTTCGAA
CGCCACTCCGAACGCGCCGCGGTCGTGTTCGTCGACGTCAACCAGCTCAAATATGTCAACGACACATTTGGCCACGCCGC
GGGCGATTTTGCGCTGATGGAAATTGCCAAACGCCTCGCCGCGTCGATCCGCGCCACCGACGTGGCGGCGCGCATCGGCG
GCGACGAGTTCGGGCTGATCCTCGACCAGTCGACCGAGGAGGGCGCGCGCGCGCAGGTCGAACGGCTGCGCGGCATACTG
ACCGCCGCGCCCGCGCAGTATGACGGACACGAGATCGCGCTTTCGGCCTGCTTCGGCGTCGCGATGCTGCAAACGGGCAT
GACCGAATCGGACATATTGGCCGCCGCCGACCGCGACATGTACAAAAGCAAGCAAAGGCAGGACGTGCCCGTGGGACACC
GCTAA

Upstream 100 bases:

>100_bases
CGCCGCGTTTACCGATTGGTATCAAGTCGCGGCTAGGGTTGGGCCCATCATATCCGTCGGCATCCCGCCGGTGGACGTCA
GGGCGCGCCGGGGACAAGGC

Downstream 100 bases:

>100_bases
CGCCGCCTTAACCAAATTGGCGCATCGTCACGTCCTCAGCAGGGGGATGGACGATGCAGACCCAGACCGACCCATATCTC
GACATGCAGAACCGGATCAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MDSVGGARIAVDQFAAVSVDSIEDQLRELRRERDALRRENRVLKIAVAELERVSERDTLTPLFNRRYFLTAIHHRMARFE
RHSERAAVVFVDVNQLKYVNDTFGHAAGDFALMEIAKRLAASIRATDVAARIGGDEFGLILDQSTEEGARAQVERLRGIL
TAAPAQYDGHEIALSACFGVAMLQTGMTESDILAAADRDMYKSKQRQDVPVGHR

Sequences:

>Translated_214_residues
MDSVGGARIAVDQFAAVSVDSIEDQLRELRRERDALRRENRVLKIAVAELERVSERDTLTPLFNRRYFLTAIHHRMARFE
RHSERAAVVFVDVNQLKYVNDTFGHAAGDFALMEIAKRLAASIRATDVAARIGGDEFGLILDQSTEEGARAQVERLRGIL
TAAPAQYDGHEIALSACFGVAMLQTGMTESDILAAADRDMYKSKQRQDVPVGHR
>Mature_214_residues
MDSVGGARIAVDQFAAVSVDSIEDQLRELRRERDALRRENRVLKIAVAELERVSERDTLTPLFNRRYFLTAIHHRMARFE
RHSERAAVVFVDVNQLKYVNDTFGHAAGDFALMEIAKRLAASIRATDVAARIGGDEFGLILDQSTEEGARAQVERLRGIL
TAAPAQYDGHEIALSACFGVAMLQTGMTESDILAAADRDMYKSKQRQDVPVGHR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=157, Percent_Identity=31.2101910828025, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=204, Percent_Identity=32.3529411764706, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=151, Percent_Identity=31.7880794701987, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=157, Percent_Identity=32.484076433121, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=32.2368421052632, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=30.379746835443, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=32.9479768786127, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=150, Percent_Identity=31.3333333333333, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787816, Length=153, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=30.8988764044944, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081881, Length=157, Percent_Identity=25.4777070063694, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 23870; Mature: 23870

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSVGGARIAVDQFAAVSVDSIEDQLRELRRERDALRRENRVLKIAVAELERVSERDTLT
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCC
PLFNRRYFLTAIHHRMARFERHSERAAVVFVDVNQLKYVNDTFGHAAGDFALMEIAKRLA
HHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ASIRATDVAARIGGDEFGLILDQSTEEGARAQVERLRGILTAAPAQYDGHEIALSACFGV
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AMLQTGMTESDILAAADRDMYKSKQRQDVPVGHR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDSVGGARIAVDQFAAVSVDSIEDQLRELRRERDALRRENRVLKIAVAELERVSERDTLT
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCC
PLFNRRYFLTAIHHRMARFERHSERAAVVFVDVNQLKYVNDTFGHAAGDFALMEIAKRLA
HHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ASIRATDVAARIGGDEFGLILDQSTEEGARAQVERLRGILTAAPAQYDGHEIALSACFGV
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AMLQTGMTESDILAAADRDMYKSKQRQDVPVGHR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]