Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487801

Identifier: 103487801

GI number: 103487801

Start: 2448925

End: 2450160

Strand: Direct

Name: 103487801

Synonym: Sala_2320

Alternate gene names: NA

Gene position: 2448925-2450160 (Clockwise)

Preceding gene: 103487800

Following gene: 103487802

Centisome position: 73.21

GC content: 68.12

Gene sequence:

>1236_bases
ATGCGTTCGAGTCTGCGTTTCGTTTCCGTCACCGCCATCGCCGCGCTGCTCGCCGCCGTTCCGGGGTCGGCGCAAAGGAC
CACCGGCCCCAGCGAACGTTATGAAATGGACGTCGCGACCGCGTCGGGCTTTGCCGCAATGACCGCGGGCGGGCGCAAGC
CCGGCGTCGGCGGGATGATGGGGATGATGTTCGGCGGCGGACCCGACAACCAGGTCGCGCGCACGATCGAACTGCGCCTG
GGGTCGAACCAGGCGCCAGCCAGGCCCCCCGTGCGCGCCGATCATTTTTTCCCGCCGCAGGCCAGGCTCGGCGCGTCGCT
GCCGCTGTGGGGCCCCGAACCCAGCCAGCCGCGCCCGCGCGAGGACGGCAATGACATGCCCGACAATTTCGAGCGTCCGA
AGGGCCGCCTGCTGCTCTATTGGGGCTGCGGCGCCAGGGCGGGGCCGGGCCAGCCCGTCGTGATCGATTTCGCCAAGGTC
GCGGCGGGACAGGTGCCGCCAAACCTCTTCACCTCGACCGTCCCGCGCATCCGCGAGGTGATGGCGTCGAACAGCGCGTC
CTACGCCGACTGGCCGAACGCCAAATCGTCGAAAGCGGTGCCGAAGGACAGCTCGCTGCTCGGCGCACACCGCGTCGCGG
GCAATGTCGGGCCGGAGATCAATTTCACGCTTGCGCAGGATTATATGCCCGCGCTGAATGCCTCCACCGCGATGCAGGGC
GACGGGTCGGTGATGATCCGCTGGAATGCGCTCCAGGGCGCGACCGGCTATGTCGCCTGGGCGTTCGGCGGCATGGATCG
CGGCGGCGGCAATGGCGACATGGTGTGGTGGACGAGCAGCGCGTCGCAGCAGTTCGGCGGCGGCCTCTGGGACTGGCTGC
CGCCCGCGACCGTCGCAAGACTCGTCACGCAAAAGATCGTCATGCCGCCCGCGCAGACGAGCTGCCAGATCCCCGCCGAG
GTCAAGAAGGCGTCGGGCGAGATGATGTTCGGCAACCTAAACGCCTTTGGCCCCGAAGCGAGCTTCGCCTATCCGCCCAA
GCCCACGGGCAATGCGGCGTGGACCATCGACTGGACCGCGAAGGTGCGCTTCCGCTCGCACACCATGCTGTTGATCGGCG
CCGATTTCGGCGGCATGGGCGGGATGAGCGGCGGTAGCGACGCACCCGCAGAAAAACCGAAGAAAAAGAAGTGTAAAGGC
CCGCTCGGCATCCCGCTGCCCGACGGGACGTGCTGA

Upstream 100 bases:

>100_bases
CTCACTTGGCGTTCGCCCAACCTGCGCCTATACATGCGCAAACCAGAACAGATTCCGGTCGCATCATCCGTGGGGGCACC
CCCGCAACAGGGAGGTTTGC

Downstream 100 bases:

>100_bases
CCGCGCGGTCAGCGCCCGTTCACACCGGACACGCTAAACGAGTCGGCGGTAGGGCATGTTTGAAGACAGGAGTCGAACCA
TGCGTCATCTGATCCCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MRSSLRFVSVTAIAALLAAVPGSAQRTTGPSERYEMDVATASGFAAMTAGGRKPGVGGMMGMMFGGGPDNQVARTIELRL
GSNQAPARPPVRADHFFPPQARLGASLPLWGPEPSQPRPREDGNDMPDNFERPKGRLLLYWGCGARAGPGQPVVIDFAKV
AAGQVPPNLFTSTVPRIREVMASNSASYADWPNAKSSKAVPKDSSLLGAHRVAGNVGPEINFTLAQDYMPALNASTAMQG
DGSVMIRWNALQGATGYVAWAFGGMDRGGGNGDMVWWTSSASQQFGGGLWDWLPPATVARLVTQKIVMPPAQTSCQIPAE
VKKASGEMMFGNLNAFGPEASFAYPPKPTGNAAWTIDWTAKVRFRSHTMLLIGADFGGMGGMSGGSDAPAEKPKKKKCKG
PLGIPLPDGTC

Sequences:

>Translated_411_residues
MRSSLRFVSVTAIAALLAAVPGSAQRTTGPSERYEMDVATASGFAAMTAGGRKPGVGGMMGMMFGGGPDNQVARTIELRL
GSNQAPARPPVRADHFFPPQARLGASLPLWGPEPSQPRPREDGNDMPDNFERPKGRLLLYWGCGARAGPGQPVVIDFAKV
AAGQVPPNLFTSTVPRIREVMASNSASYADWPNAKSSKAVPKDSSLLGAHRVAGNVGPEINFTLAQDYMPALNASTAMQG
DGSVMIRWNALQGATGYVAWAFGGMDRGGGNGDMVWWTSSASQQFGGGLWDWLPPATVARLVTQKIVMPPAQTSCQIPAE
VKKASGEMMFGNLNAFGPEASFAYPPKPTGNAAWTIDWTAKVRFRSHTMLLIGADFGGMGGMSGGSDAPAEKPKKKKCKG
PLGIPLPDGTC
>Mature_411_residues
MRSSLRFVSVTAIAALLAAVPGSAQRTTGPSERYEMDVATASGFAAMTAGGRKPGVGGMMGMMFGGGPDNQVARTIELRL
GSNQAPARPPVRADHFFPPQARLGASLPLWGPEPSQPRPREDGNDMPDNFERPKGRLLLYWGCGARAGPGQPVVIDFAKV
AAGQVPPNLFTSTVPRIREVMASNSASYADWPNAKSSKAVPKDSSLLGAHRVAGNVGPEINFTLAQDYMPALNASTAMQG
DGSVMIRWNALQGATGYVAWAFGGMDRGGGNGDMVWWTSSASQQFGGGLWDWLPPATVARLVTQKIVMPPAQTSCQIPAE
VKKASGEMMFGNLNAFGPEASFAYPPKPTGNAAWTIDWTAKVRFRSHTMLLIGADFGGMGGMSGGSDAPAEKPKKKKCKG
PLGIPLPDGTC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43238; Mature: 43238

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSLRFVSVTAIAALLAAVPGSAQRTTGPSERYEMDVATASGFAAMTAGGRKPGVGGMM
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEECCCCCEEECCCCCCCCCCHHH
GMMFGGGPDNQVARTIELRLGSNQAPARPPVRADHFFPPQARLGASLPLWGPEPSQPRPR
HHHCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
EDGNDMPDNFERPKGRLLLYWGCGARAGPGQPVVIDFAKVAAGQVPPNLFTSTVPRIREV
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHH
MASNSASYADWPNAKSSKAVPKDSSLLGAHRVAGNVGPEINFTLAQDYMPALNASTAMQG
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCEECC
DGSVMIRWNALQGATGYVAWAFGGMDRGGGNGDMVWWTSSASQQFGGGLWDWLPPATVAR
CCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHH
LVTQKIVMPPAQTSCQIPAEVKKASGEMMFGNLNAFGPEASFAYPPKPTGNAAWTIDWTA
HHHHHHCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
KVRFRSHTMLLIGADFGGMGGMSGGSDAPAEKPKKKKCKGPLGIPLPDGTC
EEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSSLRFVSVTAIAALLAAVPGSAQRTTGPSERYEMDVATASGFAAMTAGGRKPGVGGMM
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEECCCCCEEECCCCCCCCCCHHH
GMMFGGGPDNQVARTIELRLGSNQAPARPPVRADHFFPPQARLGASLPLWGPEPSQPRPR
HHHCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
EDGNDMPDNFERPKGRLLLYWGCGARAGPGQPVVIDFAKVAAGQVPPNLFTSTVPRIREV
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHH
MASNSASYADWPNAKSSKAVPKDSSLLGAHRVAGNVGPEINFTLAQDYMPALNASTAMQG
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCEECC
DGSVMIRWNALQGATGYVAWAFGGMDRGGGNGDMVWWTSSASQQFGGGLWDWLPPATVAR
CCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHH
LVTQKIVMPPAQTSCQIPAEVKKASGEMMFGNLNAFGPEASFAYPPKPTGNAAWTIDWTA
HHHHHHCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
KVRFRSHTMLLIGADFGGMGGMSGGSDAPAEKPKKKKCKGPLGIPLPDGTC
EEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA