| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487686
Identifier: 103487686
GI number: 103487686
Start: 2317572
End: 2318333
Strand: Reverse
Name: 103487686
Synonym: Sala_2205
Alternate gene names: NA
Gene position: 2318333-2317572 (Counterclockwise)
Preceding gene: 103487687
Following gene: 103487685
Centisome position: 69.3
GC content: 68.37
Gene sequence:
>762_bases TTGGCCCTGAGCCCGACGAACGACGCCGCGCTGTTGCAGGAAGTCGACGAAGCCGTCCGCAAGGACCGGCTCGACACGAT CATGCAGCGCTATGGCCGCTGGATCATCGGCGGCGTGCTGGCGATCCTGCTGGCCTTTGGCGGCTATCTTTACTGGAACC ACCGGCAGGATGTCGCGCGCGGCGAACAGGCGGAGGAGCTGATCGCGGCGCTGGACAAGCTCGAGGCCAACCAGCCGCGC GCCGCGACGAGCGAGCTGGAGAAGATCGCGGCCGCGGGCACCCCGGCCTATCGCGCCGCGGCGACGATGCAGCTGGCGAA TGTCAAGGCGGGCGCGGGCGACCTCAAAGCCGCCGCCGCGCTGATGGCGAAGGTCGCCGCCGATACGCAAGTCGACCGGT CGCTCCGCGACCTGGCGCTCATTCGCCAGACGGCGTTCGAATATGACACGCTGAAGCCCGAGGCGGTGATCGCGCGGATG AAACCGATCGTTGACGCCAGGGATCCGGCGTCGAGCTGGTTCGCCAGCGCCGCCGAGCTGTCGGCGAGTGCCCACTACCG GCTTGGCCAGTTCGACCGGGCGGGTGCGCTCTATGGCCGGATCGCCAAATTGCCCGACCTTCCCAAATCGCTGCAATCGC GCTCGGTCCAGATGGCGGGGATGCTGGGCGTCGATGCCGTCGCCGACCGCGCCGCCGAAAGCGCCGCGGCCGAGCAAAAG GGAGCGGCGCCTGCCGCCCAGAAGACTGAGGAAACCAAATAA
Upstream 100 bases:
>100_bases CGGCCCGCGCGTCCGACAAGTGAAACGCTTGGCCTTTCCTCGTGTCATCGTTAAGGAAGCGGGCCGGCCTCGCGCCGTTA CCCAGTTTACGGAGGTTTGA
Downstream 100 bases:
>100_bases TATGCGGACTGCGCGTTTCGGACTTTATGCGGCGCTGCTGGCGCTGCCGCTGGCGGGTTGCGGCGTGTTCAAGGGCGACG GCGGCCCCAGGACGCCGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MALSPTNDAALLQEVDEAVRKDRLDTIMQRYGRWIIGGVLAILLAFGGYLYWNHRQDVARGEQAEELIAALDKLEANQPR AATSELEKIAAAGTPAYRAAATMQLANVKAGAGDLKAAAALMAKVAADTQVDRSLRDLALIRQTAFEYDTLKPEAVIARM KPIVDARDPASSWFASAAELSASAHYRLGQFDRAGALYGRIAKLPDLPKSLQSRSVQMAGMLGVDAVADRAAESAAAEQK GAAPAAQKTEETK
Sequences:
>Translated_253_residues MALSPTNDAALLQEVDEAVRKDRLDTIMQRYGRWIIGGVLAILLAFGGYLYWNHRQDVARGEQAEELIAALDKLEANQPR AATSELEKIAAAGTPAYRAAATMQLANVKAGAGDLKAAAALMAKVAADTQVDRSLRDLALIRQTAFEYDTLKPEAVIARM KPIVDARDPASSWFASAAELSASAHYRLGQFDRAGALYGRIAKLPDLPKSLQSRSVQMAGMLGVDAVADRAAESAAAEQK GAAPAAQKTEETK >Mature_252_residues ALSPTNDAALLQEVDEAVRKDRLDTIMQRYGRWIIGGVLAILLAFGGYLYWNHRQDVARGEQAEELIAALDKLEANQPRA ATSELEKIAAAGTPAYRAAATMQLANVKAGAGDLKAAAALMAKVAADTQVDRSLRDLALIRQTAFEYDTLKPEAVIARMK PIVDARDPASSWFASAAELSASAHYRLGQFDRAGALYGRIAKLPDLPKSLQSRSVQMAGMLGVDAVADRAAESAAAEQKG AAPAAQKTEETK
Specific function: Unknown
COG id: COG4649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27023; Mature: 26892
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSPTNDAALLQEVDEAVRKDRLDTIMQRYGRWIIGGVLAILLAFGGYLYWNHRQDVAR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHC GEQAEELIAALDKLEANQPRAATSELEKIAAAGTPAYRAAATMQLANVKAGAGDLKAAAA CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH LMAKVAADTQVDRSLRDLALIRQTAFEYDTLKPEAVIARMKPIVDARDPASSWFASAAEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH SASAHYRLGQFDRAGALYGRIAKLPDLPKSLQSRSVQMAGMLGVDAVADRAAESAAAEQK HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAAPAAQKTEETK CCCCCHHHCCCCC >Mature Secondary Structure ALSPTNDAALLQEVDEAVRKDRLDTIMQRYGRWIIGGVLAILLAFGGYLYWNHRQDVAR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHC GEQAEELIAALDKLEANQPRAATSELEKIAAAGTPAYRAAATMQLANVKAGAGDLKAAAA CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH LMAKVAADTQVDRSLRDLALIRQTAFEYDTLKPEAVIARMKPIVDARDPASSWFASAAEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH SASAHYRLGQFDRAGALYGRIAKLPDLPKSLQSRSVQMAGMLGVDAVADRAAESAAAEQK HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAAPAAQKTEETK CCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA