| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487587
Identifier: 103487587
GI number: 103487587
Start: 2212828
End: 2213289
Strand: Reverse
Name: 103487587
Synonym: Sala_2106
Alternate gene names: NA
Gene position: 2213289-2212828 (Counterclockwise)
Preceding gene: 103487591
Following gene: 103487580
Centisome position: 66.16
GC content: 68.18
Gene sequence:
>462_bases ATGGCCCGCCGCCCCGCTTGTCGAGAATGCTTCACCCGATTCGCCGCGGCTTTCGCGCTCTCATGCGTCATGCCCGTGAC GGCGGGTGCGCAGATGCAGGGGCCGCCCGCACCGCCGCCGCCGCGCGACGCCGAAAGCGCGGTCGCGAATGCGAAGGAAC TGGTCGATCCCATCCGGCGCTGCAAACCTACCGAGGACGGAACGATCAACGTCTGCGGCACCGACACCGAGCGCCACCGC CTGACCCCCGAACTGCGCGCGATCGCGCAGGAAGGTCGCGAGGCGCCGCCGAAGCTGCCGCGCGCCGAAGCGCGGGCGAT GAGCCTCGACAAGCTGCCCTATAACTGGATATCGATCGGCGGCCGCATGAAACCCGGCCCCGAATATAATGCGCTTTATG AGATGGCAAAGGAGCGCACCGACCCCGAAACGGGAACGCCGCCGCCCCTGGAAGAGCCCTAG
Upstream 100 bases:
>100_bases TCTCGAGCACGAGCACCCGGTCGAGGTTGCTGCCGCTGTTCGTCATCTCCACCACTCTCCGTCTTTACTTGCTGCGCCCG TTCGGCATGGTGGGCGCCAT
Downstream 100 bases:
>100_bases CAGGCTGCGGAAAAGCGGGTGCGTTCGGCCTTTTCTCCAACGGACCGAGGCTTAGACGCGTTTCGGCGAGGGGTTTGAGG CGGTCTTTTCGGCCATTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MARRPACRECFTRFAAAFALSCVMPVTAGAQMQGPPAPPPPRDAESAVANAKELVDPIRRCKPTEDGTINVCGTDTERHR LTPELRAIAQEGREAPPKLPRAEARAMSLDKLPYNWISIGGRMKPGPEYNALYEMAKERTDPETGTPPPLEEP
Sequences:
>Translated_153_residues MARRPACRECFTRFAAAFALSCVMPVTAGAQMQGPPAPPPPRDAESAVANAKELVDPIRRCKPTEDGTINVCGTDTERHR LTPELRAIAQEGREAPPKLPRAEARAMSLDKLPYNWISIGGRMKPGPEYNALYEMAKERTDPETGTPPPLEEP >Mature_152_residues ARRPACRECFTRFAAAFALSCVMPVTAGAQMQGPPAPPPPRDAESAVANAKELVDPIRRCKPTEDGTINVCGTDTERHRL TPELRAIAQEGREAPPKLPRAEARAMSLDKLPYNWISIGGRMKPGPEYNALYEMAKERTDPETGTPPPLEEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16737; Mature: 16606
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRPACRECFTRFAAAFALSCVMPVTAGAQMQGPPAPPPPRDAESAVANAKELVDPIRR CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CKPTEDGTINVCGTDTERHRLTPELRAIAQEGREAPPKLPRAEARAMSLDKLPYNWISIG CCCCCCCEEEEECCCCHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHCC GRMKPGPEYNALYEMAKERTDPETGTPPPLEEP CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure ARRPACRECFTRFAAAFALSCVMPVTAGAQMQGPPAPPPPRDAESAVANAKELVDPIRR CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH CKPTEDGTINVCGTDTERHRLTPELRAIAQEGREAPPKLPRAEARAMSLDKLPYNWISIG CCCCCCCEEEEECCCCHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHCC GRMKPGPEYNALYEMAKERTDPETGTPPPLEEP CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA