| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487573
Identifier: 103487573
GI number: 103487573
Start: 2198941
End: 2199729
Strand: Reverse
Name: 103487573
Synonym: Sala_2092
Alternate gene names: NA
Gene position: 2199729-2198941 (Counterclockwise)
Preceding gene: 103487575
Following gene: 103487569
Centisome position: 65.76
GC content: 72.37
Gene sequence:
>789_bases ATGGCGGCTAAGGTGGTGCGGAGTTCGCGGGGGGAATCGGATGCGGTTTCGGGCGGCGGCGACGTGAGAAACAGGCCCTC CCCCAACCCCTCCCGCAAGCGGGAGGGGAGCAAGGCGGACGGTGAGGCGGGGGGCAGGGAAAATCCCCTCATGCCGGGCC TGCGCATCCGCGAGGATGGGTGGACCGCGGCGCGGACGCGGACGTTTCTGGCGGTGCTCGCGCAGTCGGGGTGCGTCACC GATGCGGCGCGCGTCGCGGGGATGAGCCGCAAGGCGGTGAACGACGCGCGGCGGCGCTTCGAGCCATTCGATCGCGCCTG TTCGACCGCGCTGGCGCGGGCGCTGCGCGGGCTGCAGGCGGTCGCCTATGAACGCGCGGTGGTCGGGCGCGAGACGGTGA TCCTGCGCGGCGGGCAGGAGGTCGAGCGGCGGATCATGCCGTCGGACGCGATGCTGGGGCTGCTTTTGAAACGCGGCGAG CTGGGGGAGGGCGGCGCGGCGCGGACGCTTTACGCGCGCTATGACGGCGATGCGGCGATCAGCGCCGAGGAGCATATGGA GGGCTGGCGCTTCGACGGCGCAGGCATCAAATACTTCCATCCGGGCAGCGCGCGCGAAAGGCTGGCCGACAAGCTCTATC GGATGCGCGCAGCGGCGGTCGACGAGGAAGCCGAAAGCGGGCGCTGTATGCGCTGCGGCCAGCTGGCGAGCGGAGCAGCG GCCGCGCGGCTCGCCGTGGCGCGCGACGCCGAGGCGGAGATGGACGCCGAAGCCGGCGCCGCTGCGTAA
Upstream 100 bases:
>100_bases GGATGACGATTTGGGGGGCGTCACATTTTTCGCTTTCCTACATTATCCAAATAGGTTCAAAATCATTCCGATTCATTCCA GTGATTCGGGAGATGGCGCT
Downstream 100 bases:
>100_bases CGCGTGAGCGCGAGGTGGGCGCCGGGCGGCGATTTCGACCGGGGCGGGAAGACGGCCGCCCGCCTTCCCGCATTCCGGTC AATATTTGACGCGCGCCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVT DAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGE LGEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA AARLAVARDAEAEMDAEAGAAA
Sequences:
>Translated_262_residues MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVT DAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGE LGEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA AARLAVARDAEAEMDAEAGAAA >Mature_261_residues AAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVTD AARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGEL GEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAAA ARLAVARDAEAEMDAEAGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27941; Mature: 27810
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDG CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC WTAARTRTFLAVLAQSGCVTDAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH VAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGELGEGGAARTLYARYDGDAAI HHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEE SAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA CHHHHHCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEHHHHHCCHH AARLAVARDAEAEMDAEAGAAA HHHHHHHCCCCHHHCCCCCCCC >Mature Secondary Structure AAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDG CCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC WTAARTRTFLAVLAQSGCVTDAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH VAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGELGEGGAARTLYARYDGDAAI HHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEE SAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA CHHHHHCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEHHHHHCCHH AARLAVARDAEAEMDAEAGAAA HHHHHHHCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA