Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487573

Identifier: 103487573

GI number: 103487573

Start: 2198941

End: 2199729

Strand: Reverse

Name: 103487573

Synonym: Sala_2092

Alternate gene names: NA

Gene position: 2199729-2198941 (Counterclockwise)

Preceding gene: 103487575

Following gene: 103487569

Centisome position: 65.76

GC content: 72.37

Gene sequence:

>789_bases
ATGGCGGCTAAGGTGGTGCGGAGTTCGCGGGGGGAATCGGATGCGGTTTCGGGCGGCGGCGACGTGAGAAACAGGCCCTC
CCCCAACCCCTCCCGCAAGCGGGAGGGGAGCAAGGCGGACGGTGAGGCGGGGGGCAGGGAAAATCCCCTCATGCCGGGCC
TGCGCATCCGCGAGGATGGGTGGACCGCGGCGCGGACGCGGACGTTTCTGGCGGTGCTCGCGCAGTCGGGGTGCGTCACC
GATGCGGCGCGCGTCGCGGGGATGAGCCGCAAGGCGGTGAACGACGCGCGGCGGCGCTTCGAGCCATTCGATCGCGCCTG
TTCGACCGCGCTGGCGCGGGCGCTGCGCGGGCTGCAGGCGGTCGCCTATGAACGCGCGGTGGTCGGGCGCGAGACGGTGA
TCCTGCGCGGCGGGCAGGAGGTCGAGCGGCGGATCATGCCGTCGGACGCGATGCTGGGGCTGCTTTTGAAACGCGGCGAG
CTGGGGGAGGGCGGCGCGGCGCGGACGCTTTACGCGCGCTATGACGGCGATGCGGCGATCAGCGCCGAGGAGCATATGGA
GGGCTGGCGCTTCGACGGCGCAGGCATCAAATACTTCCATCCGGGCAGCGCGCGCGAAAGGCTGGCCGACAAGCTCTATC
GGATGCGCGCAGCGGCGGTCGACGAGGAAGCCGAAAGCGGGCGCTGTATGCGCTGCGGCCAGCTGGCGAGCGGAGCAGCG
GCCGCGCGGCTCGCCGTGGCGCGCGACGCCGAGGCGGAGATGGACGCCGAAGCCGGCGCCGCTGCGTAA

Upstream 100 bases:

>100_bases
GGATGACGATTTGGGGGGCGTCACATTTTTCGCTTTCCTACATTATCCAAATAGGTTCAAAATCATTCCGATTCATTCCA
GTGATTCGGGAGATGGCGCT

Downstream 100 bases:

>100_bases
CGCGTGAGCGCGAGGTGGGCGCCGGGCGGCGATTTCGACCGGGGCGGGAAGACGGCCGCCCGCCTTCCCGCATTCCGGTC
AATATTTGACGCGCGCCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVT
DAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGE
LGEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA
AARLAVARDAEAEMDAEAGAAA

Sequences:

>Translated_262_residues
MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVT
DAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGE
LGEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA
AARLAVARDAEAEMDAEAGAAA
>Mature_261_residues
AAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDGWTAARTRTFLAVLAQSGCVTD
AARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQAVAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGEL
GEGGAARTLYARYDGDAAISAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAAA
ARLAVARDAEAEMDAEAGAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27941; Mature: 27810

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDG
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
WTAARTRTFLAVLAQSGCVTDAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQA
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGELGEGGAARTLYARYDGDAAI
HHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEE
SAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA
CHHHHHCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEHHHHHCCHH
AARLAVARDAEAEMDAEAGAAA
HHHHHHHCCCCHHHCCCCCCCC
>Mature Secondary Structure 
AAKVVRSSRGESDAVSGGGDVRNRPSPNPSRKREGSKADGEAGGRENPLMPGLRIREDG
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
WTAARTRTFLAVLAQSGCVTDAARVAGMSRKAVNDARRRFEPFDRACSTALARALRGLQA
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VAYERAVVGRETVILRGGQEVERRIMPSDAMLGLLLKRGELGEGGAARTLYARYDGDAAI
HHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEE
SAEEHMEGWRFDGAGIKYFHPGSARERLADKLYRMRAAAVDEEAESGRCMRCGQLASGAA
CHHHHHCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEHHHHHCCHH
AARLAVARDAEAEMDAEAGAAA
HHHHHHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA