| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487495
Identifier: 103487495
GI number: 103487495
Start: 2122337
End: 2123026
Strand: Reverse
Name: 103487495
Synonym: Sala_2012
Alternate gene names: NA
Gene position: 2123026-2122337 (Counterclockwise)
Preceding gene: 103487496
Following gene: 103487494
Centisome position: 63.47
GC content: 63.77
Gene sequence:
>690_bases ATGAGCAAGATGAACTTCCGGCGGTTGGGCCTTGCCGCCATGTTGGGGGCGGCGCTCGCGCTGGCGGGCTGTGCCACCCC GTTCAAGGCCGATGTTGCGCGCTTTCAGTCGCAGCTTCCCGCGCCGCAGGGGCAGAGCTTCGTCGTAGAGGCGAGCAACC CGGCGCTGCAAGGCGGCATCGAGTTCGGCCAATATGCCAATATCGTGGCGGGTGAGCTCACGCGCTATGGTTATCGCCCG GCCGCAAATGGTGAAAAGGCCGATCTGATCGTGCGCATGGATTATGGCGTCGACAAGGGCCGCGAGCGCGTCGTTTCGAG CCCGGGTTTCGCCGATCCCTGGTATGGCGGCTATTATGGTTATGGCTTTTATCGCCCGGTGATCGTCCGCGGCCCCGGTG GGCGCCGCTATGTCTATGGTTATCGTGATCCCTTCCTGTGGGGCGGTTTCGGTCCGGGCTGGGGATATAACGACATCAGC AGCTACACCGTCTATACCAGCGGGCTGACGCTGCAGATCAATCGTGCGGCCGACGGCACGCGCCTGTTCGAGGGTCGCGC CGAGGCGCAGTCGCGCGACAATGACCTGCAGACGCTCGTTCCCAATCTGGTGGAGGCGATGTTCACCGGCTTCCCCGGCA ATTCGGGCGAACGGGTTCGCATTACGGTGGCGCCGCCCGAAAAGGGCTGA
Upstream 100 bases:
>100_bases GGGTGCGACGAACCGGGTTCAACCAAGGTTAAGTCGCATTGGCATAGTCTATGCTATGACTGCGCATTCCGAACGCGCGC CGAATCATGGAGCCAGGACG
Downstream 100 bases:
>100_bases TCGCTGAGCGGACAACGCCACGGGCCCGCCTTTCCGATGACGGGCGGGCCATTTTCGTGCGGCTGGCGCAATTGGCTGGA AGGCAGGATCATCAATCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSKMNFRRLGLAAMLGAALALAGCATPFKADVARFQSQLPAPQGQSFVVEASNPALQGGIEFGQYANIVAGELTRYGYRP AANGEKADLIVRMDYGVDKGRERVVSSPGFADPWYGGYYGYGFYRPVIVRGPGGRRYVYGYRDPFLWGGFGPGWGYNDIS SYTVYTSGLTLQINRAADGTRLFEGRAEAQSRDNDLQTLVPNLVEAMFTGFPGNSGERVRITVAPPEKG
Sequences:
>Translated_229_residues MSKMNFRRLGLAAMLGAALALAGCATPFKADVARFQSQLPAPQGQSFVVEASNPALQGGIEFGQYANIVAGELTRYGYRP AANGEKADLIVRMDYGVDKGRERVVSSPGFADPWYGGYYGYGFYRPVIVRGPGGRRYVYGYRDPFLWGGFGPGWGYNDIS SYTVYTSGLTLQINRAADGTRLFEGRAEAQSRDNDLQTLVPNLVEAMFTGFPGNSGERVRITVAPPEKG >Mature_228_residues SKMNFRRLGLAAMLGAALALAGCATPFKADVARFQSQLPAPQGQSFVVEASNPALQGGIEFGQYANIVAGELTRYGYRPA ANGEKADLIVRMDYGVDKGRERVVSSPGFADPWYGGYYGYGFYRPVIVRGPGGRRYVYGYRDPFLWGGFGPGWGYNDISS YTVYTSGLTLQINRAADGTRLFEGRAEAQSRDNDLQTLVPNLVEAMFTGFPGNSGERVRITVAPPEKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24882; Mature: 24751
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMNFRRLGLAAMLGAALALAGCATPFKADVARFQSQLPAPQGQSFVVEASNPALQGGI CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCC EFGQYANIVAGELTRYGYRPAANGEKADLIVRMDYGVDKGRERVVSSPGFADPWYGGYYG CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCEEC YGFYRPVIVRGPGGRRYVYGYRDPFLWGGFGPGWGYNDISSYTVYTSGLTLQINRAADGT CCEECEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCCCEEEEECCEEEEEECCCCCC RLFEGRAEAQSRDNDLQTLVPNLVEAMFTGFPGNSGERVRITVAPPEKG EEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure SKMNFRRLGLAAMLGAALALAGCATPFKADVARFQSQLPAPQGQSFVVEASNPALQGGI CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCC EFGQYANIVAGELTRYGYRPAANGEKADLIVRMDYGVDKGRERVVSSPGFADPWYGGYYG CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCEEC YGFYRPVIVRGPGGRRYVYGYRDPFLWGGFGPGWGYNDISSYTVYTSGLTLQINRAADGT CCEECEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCCCEEEEECCEEEEEECCCCCC RLFEGRAEAQSRDNDLQTLVPNLVEAMFTGFPGNSGERVRITVAPPEKG EEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA