| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487486
Identifier: 103487486
GI number: 103487486
Start: 2112334
End: 2112975
Strand: Reverse
Name: 103487486
Synonym: Sala_2003
Alternate gene names: NA
Gene position: 2112975-2112334 (Counterclockwise)
Preceding gene: 103487487
Following gene: 103487485
Centisome position: 63.16
GC content: 49.38
Gene sequence:
>642_bases ATGTTCCGTTATATGGCAGACCAGCTACCTCTGATTCGCGCCGTTGCGTTTTTCGACGGACAAAATCTTTTCCACTCTGC GAAGCAAGCGTTTGGATACAGCTGGCCCAATTTTGATCCAACCCTATTGGCAGAACGAGTTTGCCAAGACCATGGTTGGC AGTTGCAGCAAACACGCTTTTATACCGGCGTTCCGGATGCGGCAGACAAGCCGTTCTGGAATCATTTTTGGGTTGCAAAA GCTGCTCAAATGGCTCGCCAAGGCGTCCATGTTTTTACTCGTTCCTTACGCTATCGGAACAAAAAAGTCAGACTGCCTGA TGGTACAGAACACTCATTTCTAGACGGAGATGAGAAGGGGATAGATGTTCGTATCGCGCTAGATGTCATCAGGCTTGCCT TGAAACGAGAGTTTGACGTGGCGATCCTGTTTTGTCGTGATCAAGATCTTACCGAAGTGGCCGACGAAATTCGGCTGATA GCACAAGAACAAAAACGTTGGATCAAGGTAGCCTCCGCCTTTCCGGTAAGCCCGACATATCGCGTAAGAGGCATCGACAA GACAGATTGGATCAAGCTCGACCGGCAGCTTTACGACCAATGTCTGGATAGCCGCGACTATCGTCCAAAGAAGCCTGCCT AA
Upstream 100 bases:
>100_bases GTCTTATCTGACGGTCATCAACTTCTTCCCCGCCGGACACGCCGAAAGGCCTCCGGCGGGGTTATTAATTTTGGCCTAGC GAAACTGTTATGTTCATGAC
Downstream 100 bases:
>100_bases ATAGGAGATCATCATGAACTGGTTTGGCCGGAAGGCTGCGCAGGGGGCTGCGCGGCCCGCTTTGTCGCGGGTGTATGGGA GCTGGTCGGCGCCTGCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MFRYMADQLPLIRAVAFFDGQNLFHSAKQAFGYSWPNFDPTLLAERVCQDHGWQLQQTRFYTGVPDAADKPFWNHFWVAK AAQMARQGVHVFTRSLRYRNKKVRLPDGTEHSFLDGDEKGIDVRIALDVIRLALKREFDVAILFCRDQDLTEVADEIRLI AQEQKRWIKVASAFPVSPTYRVRGIDKTDWIKLDRQLYDQCLDSRDYRPKKPA
Sequences:
>Translated_213_residues MFRYMADQLPLIRAVAFFDGQNLFHSAKQAFGYSWPNFDPTLLAERVCQDHGWQLQQTRFYTGVPDAADKPFWNHFWVAK AAQMARQGVHVFTRSLRYRNKKVRLPDGTEHSFLDGDEKGIDVRIALDVIRLALKREFDVAILFCRDQDLTEVADEIRLI AQEQKRWIKVASAFPVSPTYRVRGIDKTDWIKLDRQLYDQCLDSRDYRPKKPA >Mature_213_residues MFRYMADQLPLIRAVAFFDGQNLFHSAKQAFGYSWPNFDPTLLAERVCQDHGWQLQQTRFYTGVPDAADKPFWNHFWVAK AAQMARQGVHVFTRSLRYRNKKVRLPDGTEHSFLDGDEKGIDVRIALDVIRLALKREFDVAILFCRDQDLTEVADEIRLI AQEQKRWIKVASAFPVSPTYRVRGIDKTDWIKLDRQLYDQCLDSRDYRPKKPA
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24969; Mature: 24969
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRYMADQLPLIRAVAFFDGQNLFHSAKQAFGYSWPNFDPTLLAERVCQDHGWQLQQTRF CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEECCEE YTGVPDAADKPFWNHFWVAKAAQMARQGVHVFTRSLRYRNKKVRLPDGTEHSFLDGDEKG ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC IDVRIALDVIRLALKREFDVAILFCRDQDLTEVADEIRLIAQEQKRWIKVASAFPVSPTY EEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE RVRGIDKTDWIKLDRQLYDQCLDSRDYRPKKPA EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MFRYMADQLPLIRAVAFFDGQNLFHSAKQAFGYSWPNFDPTLLAERVCQDHGWQLQQTRF CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEECCEE YTGVPDAADKPFWNHFWVAKAAQMARQGVHVFTRSLRYRNKKVRLPDGTEHSFLDGDEKG ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC IDVRIALDVIRLALKREFDVAILFCRDQDLTEVADEIRLIAQEQKRWIKVASAFPVSPTY EEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE RVRGIDKTDWIKLDRQLYDQCLDSRDYRPKKPA EEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA