Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487483

Identifier: 103487483

GI number: 103487483

Start: 2110339

End: 2110788

Strand: Reverse

Name: 103487483

Synonym: Sala_2000

Alternate gene names: NA

Gene position: 2110788-2110339 (Counterclockwise)

Preceding gene: 103487484

Following gene: 103487482

Centisome position: 63.1

GC content: 71.78

Gene sequence:

>450_bases
GTGAGAATCGCCCACTTGAGTTCCCCTCTCCCAACCCTCTCCCCTGAAGGGGAGAGGGCTATCCGTTTCGCCGGTTACGC
TGCGGTGTTCGACCGCGTCGATCGGGGCGGGGACATTGTACGCAGCGGGGCGTTTGCGGCGAGTTTGCGGGCGCGGCGGG
CGGTGCCGTTGCTGTGGCAGCATCGGCCGGGAGCTGTCGTCGGCGTGATCGAGGCTTTGGCGGAGGACAAGCGCGGGCTG
CGCGTGGTCGCGCGGGTGACGCATCCGACGGCCGCCGGGCTGGTCGCGCGCGGGGCGCTGACCGGGCTGAGCTTTGGCTA
TCGGGTGACGGCGGCGCGCGGGGCGCGGCCGCGCGAGCTGCTGGCGCTCGATCTGGCCGAGGTGAGCCTGGTGGCGATGC
CGATGCAGCCGCTGGCGCGGGTGATAGCGGTGGAGGATCGCAGGCGCTGA

Upstream 100 bases:

>100_bases
CGAGCGCGTGGAAAGCGGCGGTCGACTGGGCGGTGCGCGGGATGCTGGCGCTGCTCGTCGTCGGGCTGGCGGTGAAGCTG
GGGTTGCCGGGATTGCTGAA

Downstream 100 bases:

>100_bases
TTTGGCGCTCCTCCCCATCGCAAGTCGATGGGGAGGTGGCAGCGGCGCGAGCCGTTGACGGAGGGAAATGGCGCGAGGTT
GTCGCCCCTCCACCACGCCC

Product: peptidase U35, phage prohead HK97

Products: NA

Alternate protein names: HK97 Family Phage Prohead Protease; Peptidase; Prohead Peptidase; Caudovirus Prohead Protease; Phage Prohead Protease And Phage Capsid Protein; HK97 Family Phage Prohead Protease/Phage Capsid Protein; Phage Protease; Phage Pro-Head Protease

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MRIAHLSSPLPTLSPEGERAIRFAGYAAVFDRVDRGGDIVRSGAFAASLRARRAVPLLWQHRPGAVVGVIEALAEDKRGL
RVVARVTHPTAAGLVARGALTGLSFGYRVTAARGARPRELLALDLAEVSLVAMPMQPLARVIAVEDRRR

Sequences:

>Translated_149_residues
MRIAHLSSPLPTLSPEGERAIRFAGYAAVFDRVDRGGDIVRSGAFAASLRARRAVPLLWQHRPGAVVGVIEALAEDKRGL
RVVARVTHPTAAGLVARGALTGLSFGYRVTAARGARPRELLALDLAEVSLVAMPMQPLARVIAVEDRRR
>Mature_149_residues
MRIAHLSSPLPTLSPEGERAIRFAGYAAVFDRVDRGGDIVRSGAFAASLRARRAVPLLWQHRPGAVVGVIEALAEDKRGL
RVVARVTHPTAAGLVARGALTGLSFGYRVTAARGARPRELLALDLAEVSLVAMPMQPLARVIAVEDRRR

Specific function: Unknown

COG id: COG3740

COG function: function code R; Phage head maturation protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15994; Mature: 15994

Theoretical pI: Translated: 12.08; Mature: 12.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAHLSSPLPTLSPEGERAIRFAGYAAVFDRVDRGGDIVRSGAFAASLRARRAVPLLWQ
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHCCHHHHHHHHCCCCCEEEE
HRPGAVVGVIEALAEDKRGLRVVARVTHPTAAGLVARGALTGLSFGYRVTAARGARPREL
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
LALDLAEVSLVAMPMQPLARVIAVEDRRR
HHHHHHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRIAHLSSPLPTLSPEGERAIRFAGYAAVFDRVDRGGDIVRSGAFAASLRARRAVPLLWQ
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHCCHHHHHHHHCCCCCEEEE
HRPGAVVGVIEALAEDKRGLRVVARVTHPTAAGLVARGALTGLSFGYRVTAARGARPREL
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
LALDLAEVSLVAMPMQPLARVIAVEDRRR
HHHHHHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA