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The map label for this gene is exbD [H]

Identifier: 103487470

GI number: 103487470

Start: 2096030

End: 2096455

Strand: Reverse

Name: exbD [H]

Synonym: Sala_1987

Alternate gene names: 103487470

Gene position: 2096455-2096030 (Counterclockwise)

Preceding gene: 103487471

Following gene: 103487467

Centisome position: 62.67

GC content: 64.79

Gene sequence:

>426_bases
ATGCGCCGACGCCGCAGCATTTTTCGTACCAACCCCAATGCCAGCCCGCTGATCAACACGACGCCGCTGATCGACGTGAT
GCTGGTCATGCTCGTGATGTTCGTCATCACCATCCCGCCGCCGACGCACAGCGTCGACGTAAGCCTGCCGGGAACCGAAC
CGGGGTCGGCGGAAATCCACGAAGAAAATCGCATCAGCATCGACCGGGCCGATGTGATCCGCTGGAATGGCGAGGCGGTC
GACCTGGCGCAGCTGGGGCAGTTGGTGAAGGCGTCCGCCGACCGGGCCGAACCGGTCACATTGCTGTTCGAGCCCGATGC
GCGGGCGCGTTACCTGCGCGTCGATCAGGCGATCGGCGCGATCCGCCGCAACGGCGGGACGACAATCGCCTTTCCGGGGA
TCGACGGCTATCGCGACCTGATCTGA

Upstream 100 bases:

>100_bases
CAATGTTATAACGTTACATCGACGCCGTGCCTTTGGCGTCTTTGAACGGGGGATCGCCCGACCATCGGCCGCGATACCCC
GATCGACCGGGAGAGAGACG

Downstream 100 bases:

>100_bases
TCGCACTTCAGCCCGTCGGCGCCGTTCCGGGGCGGAGATAGGCCATCATATAGCCGACGTAATCGGCCTTGCCGAGCGGC
GCTCCCATATGCCGCAGGAT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRRRRSIFRTNPNASPLINTTPLIDVMLVMLVMFVITIPPPTHSVDVSLPGTEPGSAEIHEENRISIDRADVIRWNGEAV
DLAQLGQLVKASADRAEPVTLLFEPDARARYLRVDQAIGAIRRNGGTTIAFPGIDGYRDLI

Sequences:

>Translated_141_residues
MRRRRSIFRTNPNASPLINTTPLIDVMLVMLVMFVITIPPPTHSVDVSLPGTEPGSAEIHEENRISIDRADVIRWNGEAV
DLAQLGQLVKASADRAEPVTLLFEPDARARYLRVDQAIGAIRRNGGTTIAFPGIDGYRDLI
>Mature_141_residues
MRRRRSIFRTNPNASPLINTTPLIDVMLVMLVMFVITIPPPTHSVDVSLPGTEPGSAEIHEENRISIDRADVIRWNGEAV
DLAQLGQLVKASADRAEPVTLLFEPDARARYLRVDQAIGAIRRNGGTTIAFPGIDGYRDLI

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15571; Mature: 15571

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRRSIFRTNPNASPLINTTPLIDVMLVMLVMFVITIPPPTHSVDVSLPGTEPGSAEIH
CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEC
EENRISIDRADVIRWNGEAVDLAQLGQLVKASADRAEPVTLLFEPDARARYLRVDQAIGA
CCCCEEECCCEEEEECCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
IRRNGGTTIAFPGIDGYRDLI
HHCCCCCEEEECCCCCHHHCC
>Mature Secondary Structure
MRRRRSIFRTNPNASPLINTTPLIDVMLVMLVMFVITIPPPTHSVDVSLPGTEPGSAEIH
CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEC
EENRISIDRADVIRWNGEAVDLAQLGQLVKASADRAEPVTLLFEPDARARYLRVDQAIGA
CCCCEEECCCEEEEECCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
IRRNGGTTIAFPGIDGYRDLI
HHCCCCCEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]