Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487398

Identifier: 103487398

GI number: 103487398

Start: 2017011

End: 2018003

Strand: Reverse

Name: 103487398

Synonym: Sala_1914

Alternate gene names: NA

Gene position: 2018003-2017011 (Counterclockwise)

Preceding gene: 103487399

Following gene: 103487397

Centisome position: 60.33

GC content: 72.21

Gene sequence:

>993_bases
TTGGCTGAGTGGCTTTACGAGGCCGGGATCGGCGAGGCGCGCGCGGCGCTGGTCGTGGATGGCCGTATCGTCGAGGCGCG
GATCGAGCGTGACGATGAAGGGCCGCGCGTCGGTGCGGTCGTCGCCGCAAGGTTGATCGAGGCGGGGCGGAGCGGCAGGG
ACGCACTGGTCGCGCTCGACTGGCCAGGCGAACCGCCGGCGACGCTCGGCGACGTCCCGCCCGGCACCTCGACAGGCGCG
CGGATCGCCGTCGAGATCACCCGCATGGCGCTTTGCGAGCGCGGCCGCGACAAGCCCGCGCGCGCGCGGATGGCCGAACC
GGGCGCCGTGCCGGGCGATGGCCCCGATTTGCGTGCTCGAATCGCGGCAAGTGGTGTGCCGGTGAACCTGCTGCATCCGA
CGGCCGCCGACCGGCTCGAAGCGGCGGGGTGGAGCGAGATGATCGATTGTGTACGCACGGGGCACTGGCCCTTCGCGGGC
GGCGCGCTGTGGGTCGATGCGACCCCGGCGATGGTGCTGATCGACATCGATGGCGAGGGTGACGCGCTGGCGCTCGCCAA
GACAGGCGCGGTCGAGGCGGCGGCGGTTATCCGCTGTTGCGGCATCGGCGGGTCGATCGGCATCGATTTTCCGTCGCTGC
CGGGACGCGCGGAACGGCGGGCGATCGACGCTGCGATCGACGCCGCGCTGCCGCCGCCTTTCGAGCGCACGGCGGTCAAC
GGATTTGGTTTCATGCAGATCATCCGGCGCCGCGATCGGCCATCGCTGATCGAACAGGTGCGGCTCGATCCCGTGCGGAC
CGACGCCGCGCTGCTGCTGCGGCGCGCGGAGCGCGCGGTCGGGGCGGGCGTGTTGACGCTGACCGCGCGCGGCGCAGTGA
TCGACCATATCGCAGCGCGCCCAGGCTGGATCGCGCAGCTCGAACAACGCTGCGGACGCCCGATCCGGCTGGTCGCCGAC
CCCGCGGCGACAGGAGGCGGCCATGCCCAGTAA

Upstream 100 bases:

>100_bases
GCCGAGGCCTTTGTCCGCTTCCTGTCGGGTAGCCATTCCAATGTCGTTGGCTTGCCGTTGTTCGAAACGCGGGCGCTTTT
GAGCAGCGTGGGAATCCCGC

Downstream 100 bases:

>100_bases
ATCCCCGCGCTGTCCGCTCTGCGGCAAGCCGCGCGATCCCGCCTTCAAGCCCTTTTGCAGCCGCGGTTGCCGCGACCGCG
ATCTGCTCCGCTGGTTCGGC

Product: ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAEWLYEAGIGEARAALVVDGRIVEARIERDDEGPRVGAVVAARLIEAGRSGRDALVALDWPGEPPATLGDVPPGTSTGA
RIAVEITRMALCERGRDKPARARMAEPGAVPGDGPDLRARIAASGVPVNLLHPTAADRLEAAGWSEMIDCVRTGHWPFAG
GALWVDATPAMVLIDIDGEGDALALAKTGAVEAAAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAVN
GFGFMQIIRRRDRPSLIEQVRLDPVRTDAALLLRRAERAVGAGVLTLTARGAVIDHIAARPGWIAQLEQRCGRPIRLVAD
PAATGGGHAQ

Sequences:

>Translated_330_residues
MAEWLYEAGIGEARAALVVDGRIVEARIERDDEGPRVGAVVAARLIEAGRSGRDALVALDWPGEPPATLGDVPPGTSTGA
RIAVEITRMALCERGRDKPARARMAEPGAVPGDGPDLRARIAASGVPVNLLHPTAADRLEAAGWSEMIDCVRTGHWPFAG
GALWVDATPAMVLIDIDGEGDALALAKTGAVEAAAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAVN
GFGFMQIIRRRDRPSLIEQVRLDPVRTDAALLLRRAERAVGAGVLTLTARGAVIDHIAARPGWIAQLEQRCGRPIRLVAD
PAATGGGHAQ
>Mature_329_residues
AEWLYEAGIGEARAALVVDGRIVEARIERDDEGPRVGAVVAARLIEAGRSGRDALVALDWPGEPPATLGDVPPGTSTGAR
IAVEITRMALCERGRDKPARARMAEPGAVPGDGPDLRARIAASGVPVNLLHPTAADRLEAAGWSEMIDCVRTGHWPFAGG
ALWVDATPAMVLIDIDGEGDALALAKTGAVEAAAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAVNG
FGFMQIIRRRDRPSLIEQVRLDPVRTDAALLLRRAERAVGAGVLTLTARGAVIDHIAARPGWIAQLEQRCGRPIRLVADP
AATGGGHAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34560; Mature: 34429

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEWLYEAGIGEARAALVVDGRIVEARIERDDEGPRVGAVVAARLIEAGRSGRDALVALD
CCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
WPGEPPATLGDVPPGTSTGARIAVEITRMALCERGRDKPARARMAEPGAVPGDGPDLRAR
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEE
IAASGVPVNLLHPTAADRLEAAGWSEMIDCVRTGHWPFAGGALWVDATPAMVLIDIDGEG
EEECCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCC
DALALAKTGAVEAAAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAVN
CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCC
GFGFMQIIRRRDRPSLIEQVRLDPVRTDAALLLRRAERAVGAGVLTLTARGAVIDHIAAR
CHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
PGWIAQLEQRCGRPIRLVADPAATGGGHAQ
CCHHHHHHHHCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AEWLYEAGIGEARAALVVDGRIVEARIERDDEGPRVGAVVAARLIEAGRSGRDALVALD
CCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
WPGEPPATLGDVPPGTSTGARIAVEITRMALCERGRDKPARARMAEPGAVPGDGPDLRAR
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEE
IAASGVPVNLLHPTAADRLEAAGWSEMIDCVRTGHWPFAGGALWVDATPAMVLIDIDGEG
EEECCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCC
DALALAKTGAVEAAAVIRCCGIGGSIGIDFPSLPGRAERRAIDAAIDAALPPPFERTAVN
CEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCC
GFGFMQIIRRRDRPSLIEQVRLDPVRTDAALLLRRAERAVGAGVLTLTARGAVIDHIAAR
CHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
PGWIAQLEQRCGRPIRLVADPAATGGGHAQ
CCHHHHHHHHCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA