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The map label for this gene is radA [H]

Identifier: 103487290

GI number: 103487290

Start: 1901348

End: 1902709

Strand: Reverse

Name: radA [H]

Synonym: Sala_1806

Alternate gene names: 103487290

Gene position: 1902709-1901348 (Counterclockwise)

Preceding gene: 103487294

Following gene: 103487289

Centisome position: 56.88

GC content: 67.99

Gene sequence:

>1362_bases
ATGGCCAAAGCGAAACGTCAATATGTCTGCCAGAATTGCGGCTCCGCCACCTATCGCTGGCAGGGGCAGTGCGCCGACTG
CGGCGAGTGGAACACGCTGGTCGAGGAGGCCGCCGAAACCGTCTTTTCGGCCAAGCACAACCTGAGCAAAGGCGGACGGA
CGATCCCGCTCGAAACGCTGAATGCCGAAAGCAGGATGCCCGAGCGGATGCTGTGCGGCATCGCCGAGTTCGACCGCGCA
CTGGGCGGCGGCTTCGTCGCGGGGTCGGCGACCTTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCTTGCTGTTGCA
GGCCGCGGGACGGCTCGCCAAGGCGGGCAGGTCGGTCGTCTATATCAGCGGCGAGGAGGCGGCGGCGCAGGTGCGATTGC
GCGCGCAGCGGCTGGGGCTCGGCGACGCGCCGGTCGCACTCGCCAGCGCGACATCGGTGCGCGACATCCTTGCGACGCTC
GGCAGCCGGACCGCCGATTTCGTCGTGATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGCGCGCCGGGGAC
GGTGAGCCAGGTCCGCGCGAGCGCGCAGGAGCTGATCCGCTATGCCAAGGACAGCGGCGCGGCGATCGTGCTGGTCGGGC
ATGTCACCAAGGACGGCACGATCGCCGGGCCGCGCGTGCTCGAACATATGGTCGACACGGTGCTGGCGTTCGAGGGTGAG
CGCAGCCATCAATATCGCATCCTGCGCGCGGTCAAGAACCGCTTTGGCGGCACCGACGAGATCGGCGTGTTCGCGATGGG
CGAGGAAGGGCTGGGCGAGGTATCGAACCCGTCGAGCCTGTTCCTGACCGACCGCAGCCGCGACGTGCCGGGATCGGTGG
TGTTCCCCGCGCTGGAAGGCACGCGGCCGGTGCTCGTCGAGGTGCAGGCGCTGACCGTGCGCCTCGCGAGCGGCGCAACG
CCGCGGCGGGCCGTTGTCGGATGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTGGAGGCGCGCTGCGGGCTGCA
AATGGGCGCGGCCGAAGTCTATCTCAATATCGCCGGCGGATACCGGCTGACCGATCCCGCCGCCGACCTTGCGGTTGCCA
CGGCGCTGGTTTCGGCGTTCAGCGAGCGGCCGGTGCCCCCCGATGCGATCGTCTTCGGCGAACTGTCGCTGTCGGGCGAA
GTGCGCCCGGTATCGCACGATGCGCTACGTTTGCGCGAAGCAGCAAAGCTCGGTTTTTCAACGGCCTGGGGTCCAAATGG
CATGAAGCGCGTGAACGGCATCGGCGTCACCGGCTTTGCCCGGCTCGGCGAACTCGTTGACCTGATGCTCGGTCGCGACT
AG

Upstream 100 bases:

>100_bases
GCGGGTTTGCCACGCTGGATTGCCGCGTTGCCACGCTCCTCGCAATGACGAAGAAAGTATCCACTGGCGTTCCATTTTTG
TTCCCGCTATCGAAACCCAT

Downstream 100 bases:

>100_bases
CCCGGCGAACATGGGAAGTCTGACGGCTCTGGATATCATCGTGCTGACGCTCGTCGGCGGCGGCGCGGTGCTCGGTTTCA
TGCGCGGCCTCGTGCAGGAA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MAKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHNLSKGGRTIPLETLNAESRMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
GSRTADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVATALVSAFSERPVPPDAIVFGELSLSGE
VRPVSHDALRLREAAKLGFSTAWGPNGMKRVNGIGVTGFARLGELVDLMLGRD

Sequences:

>Translated_453_residues
MAKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHNLSKGGRTIPLETLNAESRMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
GSRTADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVATALVSAFSERPVPPDAIVFGELSLSGE
VRPVSHDALRLREAAKLGFSTAWGPNGMKRVNGIGVTGFARLGELVDLMLGRD
>Mature_452_residues
AKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHNLSKGGRTIPLETLNAESRMPERMLCGIAEFDRAL
GGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATLG
SRTADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGER
SHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGATP
RRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVATALVSAFSERPVPPDAIVFGELSLSGEV
RPVSHDALRLREAAKLGFSTAWGPNGMKRVNGIGVTGFARLGELVDLMLGRD

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=456, Percent_Identity=46.2719298245614, Blast_Score=377, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 47701; Mature: 47570

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHNLSKGGRTIPLETL
CCCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
NAESRMPERMLCGIAEFDRALGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVV
CCHHCCCHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
YISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATLGSRTADFVVIDSIQTMHSDL
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
IDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
HHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEG
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCC
TRPVLVEVQALTVRLASGATPRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGG
CCCEEEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
YRLTDPAADLAVATALVSAFSERPVPPDAIVFGELSLSGEVRPVSHDALRLREAAKLGFS
EEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
TAWGPNGMKRVNGIGVTGFARLGELVDLMLGRD
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKAKRQYVCQNCGSATYRWQGQCADCGEWNTLVEEAAETVFSAKHNLSKGGRTIPLETL
CCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
NAESRMPERMLCGIAEFDRALGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVV
CCHHCCCHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
YISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATLGSRTADFVVIDSIQTMHSDL
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
IDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
HHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVSNPSSLFLTDRSRDVPGSVVFPALEG
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCC
TRPVLVEVQALTVRLASGATPRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGG
CCCEEEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
YRLTDPAADLAVATALVSAFSERPVPPDAIVFGELSLSGEVRPVSHDALRLREAAKLGFS
EEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
TAWGPNGMKRVNGIGVTGFARLGELVDLMLGRD
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA