| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487224
Identifier: 103487224
GI number: 103487224
Start: 1831275
End: 1831712
Strand: Reverse
Name: 103487224
Synonym: Sala_1739
Alternate gene names: NA
Gene position: 1831712-1831275 (Counterclockwise)
Preceding gene: 103487225
Following gene: 103487223
Centisome position: 54.76
GC content: 66.21
Gene sequence:
>438_bases ATGATGGACAAACTCTATCTGATCGCGCGCATCGCCGACACGCGCGTCGCGCTGCGCAGCCGCGCGATCCATTCGGTGGT GACTGTCGGCACGCCGGTCGAGGTGCCCGCGGCGCCGCCGCACGTCGCGGGGCTGTTCGCGCTGCGCAGCCGCGTTTTCA CGCTGATCGATCCGCATGTCGTGATCGGCCTTCCCGCGGTGCCCGTCGTCCCCGGACAGCGGGTGATCGTGATCGAGGTC GCCGAACATGGCTATGCGCTGCTCGCCGACGAAATCGAGGATGTCTGCTTCATCGAGGCGGCCGAAACGCGCATCGCCGG AAAGCTGCTTCCGGGCTGGGCGCGCGTCGCCGATGCGATGATCGAACATGACGGCGCGTCGCTGCTCGTCGTCGATCCGT CGCATCTCATTCATCTGCCCAGCTTAAAGGCCGCATGA
Upstream 100 bases:
>100_bases CCTCGATCGAGGCGGCGGCGCCCGACGACCAGAGCGTCTATCGTTACGACCGCGAAGCGCTGCTTGCCGCGATGCGCCGC CGCGTCGGAGGAGCGCGGCC
Downstream 100 bases:
>100_bases ATCGTGCCGTTCATTAACGGGCTGCATACGTCTTGCCGTTAGCATGGCGATATTCCCGGGGGTCGGAGTTAATTTGATGT CGAAATCCTGTCTGGTCGTC
Product: CheW protein
Products: NA
Alternate protein names: CheW Protein
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MMDKLYLIARIADTRVALRSRAIHSVVTVGTPVEVPAAPPHVAGLFALRSRVFTLIDPHVVIGLPAVPVVPGQRVIVIEV AEHGYALLADEIEDVCFIEAAETRIAGKLLPGWARVADAMIEHDGASLLVVDPSHLIHLPSLKAA
Sequences:
>Translated_145_residues MMDKLYLIARIADTRVALRSRAIHSVVTVGTPVEVPAAPPHVAGLFALRSRVFTLIDPHVVIGLPAVPVVPGQRVIVIEV AEHGYALLADEIEDVCFIEAAETRIAGKLLPGWARVADAMIEHDGASLLVVDPSHLIHLPSLKAA >Mature_145_residues MMDKLYLIARIADTRVALRSRAIHSVVTVGTPVEVPAAPPHVAGLFALRSRVFTLIDPHVVIGLPAVPVVPGQRVIVIEV AEHGYALLADEIEDVCFIEAAETRIAGKLLPGWARVADAMIEHDGASLLVVDPSHLIHLPSLKAA
Specific function: Unknown
COG id: COG0835
COG function: function code NT; Chemotaxis signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15497; Mature: 15497
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDKLYLIARIADTRVALRSRAIHSVVTVGTPVEVPAAPPHVAGLFALRSRVFTLIDPHV CCCCEEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHEECCEE VIGLPAVPVVPGQRVIVIEVAEHGYALLADEIEDVCFIEAAETRIAGKLLPGWARVADAM EEECCCCCCCCCCEEEEEEECCCCEEEEHHCCCCEEEEEHHHHHHHCCCCCCHHHHHHHH IEHDGASLLVVDPSHLIHLPSLKAA HHCCCCEEEEECCHHEEECCCCCCC >Mature Secondary Structure MMDKLYLIARIADTRVALRSRAIHSVVTVGTPVEVPAAPPHVAGLFALRSRVFTLIDPHV CCCCEEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHEECCEE VIGLPAVPVVPGQRVIVIEVAEHGYALLADEIEDVCFIEAAETRIAGKLLPGWARVADAM EEECCCCCCCCCCEEEEEEECCCCEEEEHHCCCCEEEEEHHHHHHHCCCCCCHHHHHHHH IEHDGASLLVVDPSHLIHLPSLKAA HHCCCCEEEEECCHHEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA