| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is ykvY [H]
Identifier: 103487130
GI number: 103487130
Start: 1727824
End: 1729068
Strand: Reverse
Name: ykvY [H]
Synonym: Sala_1645
Alternate gene names: 103487130
Gene position: 1729068-1727824 (Counterclockwise)
Preceding gene: 103487131
Following gene: 103487126
Centisome position: 51.69
GC content: 67.47
Gene sequence:
>1245_bases ATGCACCGGCGGCAATTTCTCGGCACAGCGGCATTGGGCGGGCTGGTGGCGACCTTGTCTGCGCCGGTACTGGCCACCGA CACCGCCAGCCTGCCCAACCTCGCCGCCAAGGCGGTGCCGATCGGCAAGGCCGAACGCATGGCGCGGATCGCCAAGGCCA CGGCGCTGATGCAGGAAAATGACATCGGCGCCCTGCTGATCGAGCCGGGATCGAGCCTCGTCTATTTCACCGGGGTCGAA TGGTGGCGCAGCGAGCGGCTCACCGCCGCAGTGCTGACGCGCGAGGGCGAGGTCGCGATCGTCACGCCCTTCTTCGAGGA ACCCTCGGTGCGCGAAAGCCTGGGTATCGAGGCCGAAGTGCTGACGTGGAACGAGGATGAGAATCCGCTCGCCGCCGTCG CGGCCTGGCTTGGCAGGCGCGGGCTGGCGAAGGGCAAGATCGGCGTCGAGGAAACGGTGCGTTATTTCGCGGTCGACGGG CTGGAGAAAGCGATGCCCGACGCGACCGTCGTCAACGGCGCGCCCGTCGTGCGCGGGTGCCGGATGATGAAATCGGCGGC CGAAATCGCGCTGATGCAGATCGCGAACGACATCACGCTCGCCGCTTATCGCCACACCGCGCCGCGGATCGAGGCGGGGA TGACCCCTGCCGAGATCGGCGCGATCATGCGCGCAGCGACCGTGGCGCTGGGCGGCAAGAGCGAGTTCGAGCTGATCCTG CTCGGCGAGGCGAGCGCCTATCCGCACGGGTCGGGCCAGCCGCAGGCGGTGAAGCCGGGCGAGGTCGTGCTGATGGACTG TGGCGCCTCGGTCCATGGCTATCAGTCCGACATTTCGCGCAGCTTCGTATACGGCAAGGCGAGCCCGCGCCAGCGGCAGG TGTGGGATCAGATGCGCAAGGGGCAGGATGTCGCTTTCGCCGCGGCGAAGCTTGGCACGCCCGCGGGCGCGGTCGACGAC GCGGTGCGCGCCTATTATGAAAGCCTTGGCTGGGGCCCCGGCTACAAGCTGCCCGGCACGTCGCACCGCACCGGCCACGG CATCGGCCTCGACGGGCACGAGCCGGTCAACCTCGTGCGCGGCGAGACGACGGAGTTGGCGCCGGGCATGTGTTTTTCCA ACGAGCCGGGGATTTATATTCCGGGCGAGTTCGGGATCAGGCTGGAAGATTGTTTTTACATGACCGAGGCGGGGCCGAAG TGGTTCAGCGAACCGCCACCGTCGATCGATAGGCCGTTTGCGTAG
Upstream 100 bases:
>100_bases GCGCTGGCCCCGGCGACCTCGACGCGCTGGCGCTGCCCGACGAGGCGGCGTGGCAAGAAGAAATCGCGGATCTGCTGATC TACAACTGAGGGGCAGGGCG
Downstream 100 bases:
>100_bases CCCGTCGCCCCCGCGACGGCGGGGGCCGCTGTCGGCCTTGCTCGGCATTGAGGAGTAAACCGCTGGCGGCCCCCGCCTAC GCGGTGGCGATGGTCAGGGA
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MHRRQFLGTAALGGLVATLSAPVLATDTASLPNLAAKAVPIGKAERMARIAKATALMQENDIGALLIEPGSSLVYFTGVE WWRSERLTAAVLTREGEVAIVTPFFEEPSVRESLGIEAEVLTWNEDENPLAAVAAWLGRRGLAKGKIGVEETVRYFAVDG LEKAMPDATVVNGAPVVRGCRMMKSAAEIALMQIANDITLAAYRHTAPRIEAGMTPAEIGAIMRAATVALGGKSEFELIL LGEASAYPHGSGQPQAVKPGEVVLMDCGASVHGYQSDISRSFVYGKASPRQRQVWDQMRKGQDVAFAAAKLGTPAGAVDD AVRAYYESLGWGPGYKLPGTSHRTGHGIGLDGHEPVNLVRGETTELAPGMCFSNEPGIYIPGEFGIRLEDCFYMTEAGPK WFSEPPPSIDRPFA
Sequences:
>Translated_414_residues MHRRQFLGTAALGGLVATLSAPVLATDTASLPNLAAKAVPIGKAERMARIAKATALMQENDIGALLIEPGSSLVYFTGVE WWRSERLTAAVLTREGEVAIVTPFFEEPSVRESLGIEAEVLTWNEDENPLAAVAAWLGRRGLAKGKIGVEETVRYFAVDG LEKAMPDATVVNGAPVVRGCRMMKSAAEIALMQIANDITLAAYRHTAPRIEAGMTPAEIGAIMRAATVALGGKSEFELIL LGEASAYPHGSGQPQAVKPGEVVLMDCGASVHGYQSDISRSFVYGKASPRQRQVWDQMRKGQDVAFAAAKLGTPAGAVDD AVRAYYESLGWGPGYKLPGTSHRTGHGIGLDGHEPVNLVRGETTELAPGMCFSNEPGIYIPGEFGIRLEDCFYMTEAGPK WFSEPPPSIDRPFA >Mature_414_residues MHRRQFLGTAALGGLVATLSAPVLATDTASLPNLAAKAVPIGKAERMARIAKATALMQENDIGALLIEPGSSLVYFTGVE WWRSERLTAAVLTREGEVAIVTPFFEEPSVRESLGIEAEVLTWNEDENPLAAVAAWLGRRGLAKGKIGVEETVRYFAVDG LEKAMPDATVVNGAPVVRGCRMMKSAAEIALMQIANDITLAAYRHTAPRIEAGMTPAEIGAIMRAATVALGGKSEFELIL LGEASAYPHGSGQPQAVKPGEVVLMDCGASVHGYQSDISRSFVYGKASPRQRQVWDQMRKGQDVAFAAAKLGTPAGAVDD AVRAYYESLGWGPGYKLPGTSHRTGHGIGLDGHEPVNLVRGETTELAPGMCFSNEPGIYIPGEFGIRLEDCFYMTEAGPK WFSEPPPSIDRPFA
Specific function: Unknown
COG id: COG0006
COG function: function code E; Xaa-Pro aminopeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24B family [H]
Homologues:
Organism=Homo sapiens, GI149589008, Length=272, Percent_Identity=24.2647058823529, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI260593665, Length=272, Percent_Identity=24.2647058823529, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1788728, Length=250, Percent_Identity=32, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789275, Length=326, Percent_Identity=25.1533742331288, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000587 - InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR001131 [H]
Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 44197; Mature: 44197
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRRQFLGTAALGGLVATLSAPVLATDTASLPNLAAKAVPIGKAERMARIAKATALMQEN CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCC DIGALLIEPGSSLVYFTGVEWWRSERLTAAVLTREGEVAIVTPFFEEPSVRESLGIEAEV CCCEEEECCCCCEEEEECCHHHHHCCEEEEEEECCCCEEEEECCCCCCCHHHHCCCEEEE LTWNEDENPLAAVAAWLGRRGLAKGKIGVEETVRYFAVDGLEKAMPDATVVNGAPVVRGC EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH RMMKSAAEIALMQIANDITLAAYRHTAPRIEAGMTPAEIGAIMRAATVALGGKSEFELIL HHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHEECCCCCEEEEE LGEASAYPHGSGQPQAVKPGEVVLMDCGASVHGYQSDISRSFVYGKASPRQRQVWDQMRK EECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHEEECCCCCHHHHHHHHHHC GQDVAFAAAKLGTPAGAVDDAVRAYYESLGWGPGYKLPGTSHRTGHGIGLDGHEPVNLVR CCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC GETTELAPGMCFSNEPGIYIPGEFGIRLEDCFYMTEAGPKWFSEPPPSIDRPFA CCCCCCCCCCEECCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHRRQFLGTAALGGLVATLSAPVLATDTASLPNLAAKAVPIGKAERMARIAKATALMQEN CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCC DIGALLIEPGSSLVYFTGVEWWRSERLTAAVLTREGEVAIVTPFFEEPSVRESLGIEAEV CCCEEEECCCCCEEEEECCHHHHHCCEEEEEEECCCCEEEEECCCCCCCHHHHCCCEEEE LTWNEDENPLAAVAAWLGRRGLAKGKIGVEETVRYFAVDGLEKAMPDATVVNGAPVVRGC EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH RMMKSAAEIALMQIANDITLAAYRHTAPRIEAGMTPAEIGAIMRAATVALGGKSEFELIL HHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHEECCCCCEEEEE LGEASAYPHGSGQPQAVKPGEVVLMDCGASVHGYQSDISRSFVYGKASPRQRQVWDQMRK EECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHEEECCCCCHHHHHHHHHHC GQDVAFAAAKLGTPAGAVDDAVRAYYESLGWGPGYKLPGTSHRTGHGIGLDGHEPVNLVR CCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC GETTELAPGMCFSNEPGIYIPGEFGIRLEDCFYMTEAGPKWFSEPPPSIDRPFA CCCCCCCCCCEECCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]