| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mutL
Identifier: 103487111
GI number: 103487111
Start: 1705394
End: 1707205
Strand: Reverse
Name: mutL
Synonym: Sala_1626
Alternate gene names: 103487111
Gene position: 1707205-1705394 (Counterclockwise)
Preceding gene: 103487117
Following gene: 103487108
Centisome position: 51.03
GC content: 70.75
Gene sequence:
>1812_bases ATGTCAATACGCCGCCTGCCGGAAACGCTCGTAAATCGGATCGCCGCCGGTGAAGTGGTCGAAAGACCCGCCGCGGCGCT CAAGGAACTGGTCGAAAATGCCATCGACGCGGGGGCGACTCGCATCGCGGTGCGAATCGCCGAAGGCGGCATAGCGCGGC TGGAGGTCGAGGATGACGGCTGCGGCATGACCGCCGCCGACATGGTACTCGCGCTCGAACGCCATGCGACTTCGAAGCTG CCCGACGACGCGATCGAGGCGGTGACGACGCTGGGCTTCCGGGGCGAGGCGCTGCCCTCGATCGCCAGCGTCGCGCGGTT GACGCTCGAAAGCCGGACGGCGGGCGGCGACGGCTGGCGGCGCGTCGTCGACAATGGCGCTGTCGTCGCCGAAGGCCCGG CGGCGCTTGGCCAGGGCACGCGCGTGATCGTCGAGCATCTGTTCGCGCGCGTCCCCGCGCGGCGCAAGTTCCTGCGCAGC GCGCGCAGCGAATATGCCGCCTGCCTCGATGTCGTGCGGCGGCTCGCGATGGCGCGCCCCGACGTCGGCTTCACGCTTGA GCATGACGGCCGCCGCGTGCTCGACGTGCAGGGCGGGCAGGACCGCGTCGGGCGTGTCGCCGCGCTCACCAGTCGCGACC TTGCCGCGAACAGCATCGGCGTCGACCTCGACCGCGGCGAGGTGCATCTGGGCGGCGTCATCAGCCTGCCGACCTACAAT CGCGGCATTGCCGACCATCAATATCTGTTCGTCAACGGCCGCCCGGTGAAGGACCGGCTGCTCGTCGGCGCGCTGCGCGG CGCCTATGCCGACCTGCTCGCGCGCGACCGGCACCCGGTCGTCGCGCTGTTTCTCGACGTGCCGACGGGCGAGGTCGATG TGAATGTCCATCCCGCAAAGACCGAGGTGCGCTTTCGCGATCCGCAGCTCATTCGCGGGATGATCGTCGGGGGCCTCCGG CGCGCGCTCGACGAACATGGCTTTCGCAGCGTGCAGAAGCCCGCCGAGGCGGCGCTCGCGGCGTGGCAGCAGGAACCCGT CGCGCCGCCGCCGGCGACGGGATTCCTCTTCGACCGGCGCGCCGGCGCGGCGGTGCATCCCTTCGCCGCCGAGGTATCGT TGCCCGCGGCCGACGTTGCGCGCGTCTATGACCGGCTGATGCCCTTCACCGCGCCCGCGCCGCTCGCCGGGCGCGCCGAG GTCGCGGCGACGCCGCCGCCCGCCGCCGAGGCGCATCCGCTGGGCATCGCGCGCGGCCAGATCGCGAAAACCTATATTGT CGCCGAGGCCGAGGACGGGCTGGTCATCGTCGACCAGCATGCGGCGCACGAGCGGCTGGTGCTCGAAACGCTGAAGCGCG GCATGGCGGGGCAGGCGGTCCCGTCGCAGGGCCTGCTGATCCCCGAAGTCGTCGAACTCGACGAACCCGCGTGCGACCGG CTGGAGGCCGCGGCGGATGGGCTCGCCGCGCTCGGTGTCGAGCTCGAACGCTTCGGCCCCGGTGCGGTAATGGTGCGCGC GACCCCGGCGATGCTGGGGGCGATTGATTGCCACAGGCTCGTCACCGACATCGCCGACGATCTGGCGGGCTATGACGCCG CGCTCGGCCTCAACGAACGGCTCGAACTGGTCGCCGCGACGATGGCGTGCCATGGGTCGGTGCGCGCGGGGCGCACATTG AGCGTCGCGGAGATGAACGCGCTGCTCCGCCAGATGGAGGTCACGCCGCATTCGGGCCAGTGCAACCATGGCCGCCCGAC TTGGGTAAAGCTGGCGATGGGCGATGTCGAACGGTTGTTCGGCCGAAAATGA
Upstream 100 bases:
>100_bases GGGGAAGACTCCGGCTCGGCCGAGGGCGGCGGGCTGGACGGGAAGATCGGGCTGTGCGGGTGGGTCGCGATTTGCGTCCG ACTGCGCTAGGACAGGCCCC
Downstream 100 bases:
>100_bases GGCCCGCCGGGCGGCTTACGCCATCTTCACGCCCGCAACGCCGCGTTCGACCACGCCCGTCGCGCGTTTCGACAGGCTGT TCACCGGCGTCGAGACCTTG
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDGCGMTAADMVLALERHATSKL PDDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGDGWRRVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRS ARSEYAACLDVVRRLAMARPDVGFTLEHDGRRVLDVQGGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISLPTYN RGIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNVHPAKTEVRFRDPQLIRGMIVGGLR RALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFLFDRRAGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAE VAATPPPAAEAHPLGIARGQIAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEPACDR LEAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALGLNERLELVAATMACHGSVRAGRTL SVAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDVERLFGRK
Sequences:
>Translated_603_residues MSIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDGCGMTAADMVLALERHATSKL PDDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGDGWRRVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRS ARSEYAACLDVVRRLAMARPDVGFTLEHDGRRVLDVQGGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISLPTYN RGIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNVHPAKTEVRFRDPQLIRGMIVGGLR RALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFLFDRRAGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAE VAATPPPAAEAHPLGIARGQIAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEPACDR LEAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALGLNERLELVAATMACHGSVRAGRTL SVAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDVERLFGRK >Mature_602_residues SIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDGCGMTAADMVLALERHATSKLP DDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGDGWRRVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRSA RSEYAACLDVVRRLAMARPDVGFTLEHDGRRVLDVQGGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISLPTYNR GIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNVHPAKTEVRFRDPQLIRGMIVGGLRR ALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFLFDRRAGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAEV AATPPPAAEAHPLGIARGQIAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEPACDRL EAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALGLNERLELVAATMACHGSVRAGRTLS VAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDVERLFGRK
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family
Homologues:
Organism=Homo sapiens, GI4557757, Length=312, Percent_Identity=38.1410256410256, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI4505911, Length=328, Percent_Identity=28.3536585365854, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI189458898, Length=330, Percent_Identity=28.1818181818182, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI189458896, Length=316, Percent_Identity=27.8481012658228, Blast_Score=142, Evalue=7e-34, Organism=Homo sapiens, GI4505913, Length=346, Percent_Identity=29.4797687861272, Blast_Score=136, Evalue=6e-32, Organism=Homo sapiens, GI310128478, Length=346, Percent_Identity=29.4797687861272, Blast_Score=136, Evalue=7e-32, Organism=Homo sapiens, GI263191589, Length=218, Percent_Identity=33.4862385321101, Blast_Score=104, Evalue=3e-22, Organism=Homo sapiens, GI310128480, Length=303, Percent_Identity=27.3927392739274, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI91992160, Length=346, Percent_Identity=25.1445086705202, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI91992162, Length=346, Percent_Identity=25.1445086705202, Blast_Score=84, Evalue=4e-16, Organism=Escherichia coli, GI1790612, Length=611, Percent_Identity=33.8788870703764, Blast_Score=258, Evalue=5e-70, Organism=Caenorhabditis elegans, GI71991825, Length=318, Percent_Identity=36.1635220125786, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI17562796, Length=339, Percent_Identity=28.6135693215339, Blast_Score=147, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6323819, Length=315, Percent_Identity=36.5079365079365, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6324247, Length=332, Percent_Identity=27.710843373494, Blast_Score=124, Evalue=4e-29, Organism=Saccharomyces cerevisiae, GI6325093, Length=713, Percent_Identity=21.0378681626928, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323063, Length=462, Percent_Identity=24.025974025974, Blast_Score=78, Evalue=3e-15, Organism=Drosophila melanogaster, GI17136968, Length=332, Percent_Identity=37.0481927710843, Blast_Score=188, Evalue=8e-48, Organism=Drosophila melanogaster, GI17136970, Length=350, Percent_Identity=26.2857142857143, Blast_Score=117, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MUTL_SPHAL (Q1GSN3)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616672.1 - ProteinModelPortal: Q1GSN3 - GeneID: 4081899 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1626 - NMPDR: fig|317655.9.peg.1559 - HOGENOM: HBG520262 - OMA: FLFINNR - ProtClustDB: PRK00095 - BioCyc: SALA317655:SALA_1626-MONOMER - HAMAP: MF_00149 - InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 - Gene3D: G3DSA:3.30.565.10 - Gene3D: G3DSA:3.30.230.10 - PANTHER: PTHR10073 - SMART: SM00387 - SMART: SM00853 - TIGRFAMs: TIGR00585
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C; SSF55874 ATP_bd_ATPase; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: NA
Molecular weight: Translated: 64189; Mature: 64058
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCC CGMTAADMVLALERHATSKLPDDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGDGWR CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH RVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRSARSEYAACLDVVRRLAMARP HHHCCCCEEECCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVGFTLEHDGRRVLDVQGGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISLPTYN CCCEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEEECCCCC RGIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNVHPAK CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCC TEVRFRDPQLIRGMIVGGLRRALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFLFDRR CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC AGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAEVAATPPPAAEAHPLGIARGQ CCCEECCCHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEPACDR EEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHH LEAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALGLNER HHHHHCCHHHHCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH LELVAATMACHGSVRAGRTLSVAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDVERLF HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH GRK CCC >Mature Secondary Structure SIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCC CGMTAADMVLALERHATSKLPDDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGDGWR CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH RVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRSARSEYAACLDVVRRLAMARP HHHCCCCEEECCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVGFTLEHDGRRVLDVQGGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISLPTYN CCCEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEEECCCCC RGIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNVHPAK CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCC TEVRFRDPQLIRGMIVGGLRRALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFLFDRR CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC AGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAEVAATPPPAAEAHPLGIARGQ CCCEECCCHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEPACDR EEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCHHHH LEAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALGLNER HHHHHCCHHHHCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH LELVAATMACHGSVRAGRTLSVAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDVERLF HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH GRK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA