| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487067
Identifier: 103487067
GI number: 103487067
Start: 1655327
End: 1656631
Strand: Reverse
Name: 103487067
Synonym: Sala_1582
Alternate gene names: NA
Gene position: 1656631-1655327 (Counterclockwise)
Preceding gene: 103487068
Following gene: 103487066
Centisome position: 49.52
GC content: 63.98
Gene sequence:
>1305_bases GTGGCTGACGGGATGGCGGGATCGCGCGTCGCTTCATGGAGATCGTTTGGCGCGGGCCGGTGGCTCGTGCTTGCTGTGGG GGTGGTGCTCGCGCTCTATTCGGCGGCCTTTTCGTTCGCGCTCATCTTTTCAGGTCGACAGCCGGCCGTGACAATGGCGC TTGTGCCATGGCACAGCACGGCGCCCACGGCGATCGCTGACCGGCTGATGCTGGCAGCGGCGCAGGAGAAGTTTCGCGAA GCTGGTGGGCGCGATGCACCGACCGCCGCCGCGATGACCGCACTTCTCAGCCGCGTCGGGCCATCCTTGCCCCCGGAAAA GGCGGCGCCGATCCGTGAACTGGCGCTTGAGGGGCTGTCGCAATCCGCACTGAACAGCGCAGCGCTACGCCAACTGGCTT TCCTGGAAAAAGACCGGGCGAAGCGTAAGCATCTGCTCGACCTTGCCCTGCGGGTTTCACGCCGCGACGTGCTCGCCGGC GTACAGTCGGCGGAGATCAAGTTTCTCGATAATGAAGCCGATGCCGGGCTTGCTGACCTCGACCGCGCGCTGACGGTTTC CGAGAAGGTTGACGATCTTGTCCTGCCGATAATTCTTCAGGCATCGAGCGATCCCGAAGCGCTGGCGCAGATCAGGCGTC GTGTCGCGAAAAATCCGCTGTGGATCGAGCGTCTGCTCCGATACGGAATCGACAACCCGGTCTTCGCGCCGCGTGTTGCC GACATCGTCTCCGCCATTCCCGCGCGCTCGACGGCGCGCGCGCAAGGCTATGGGCAGCAATTGATCGACATTCTGGTGAG CGCGCGCGAATATCCCGCGGCGTTCAAGGTGTATGACGTTTACTCGCCGACCCGCCAGGCCGTCGAGCGGATGGGGGGTG GAGCATTCCGGCCGATCGACTGGCAGTTGACCGAGAATTATGACGCCGGCGGCCGCGAGCTCGGCGCGCGTGAGGTCGAT ATATTTGCCAGTCCGGAACGGCAGGGTGAGTTTGCGCGGATTCTGATGCGCTCGCGTCCCGGCAGCTACAGCCTCAGCTT GCGTGCTCGCGAAGTCGAAGCGGCCGAAGGGCGATTGACGTTCAACATGCTGTGTCTTGATGAGAAGCAGGAACGGCAGG GCGCGTCGCTGAGCCTGCCGCTCAGGCAGGGCCCGATGCGGTTCGATTATAGCGTTCCACCGACCGGATGCGGTTATCAG TGGCTCATTCTGGGGATTGGAGCCGAACTCGACTCTGCAGCCGCGCTGATCGACTCAGTAACGCTGTCTCGCACCCCGGC TCGCGTTGCGGGCCCAGGGTCCTGA
Upstream 100 bases:
>100_bases GTCATTTTGACGAAACTCGACAAGCGTGATTCGGAATATGGCTATGGATACGCATATTCCTATGAATATACGAGCCGAGG TGCCGAAACCGAGTCGGCCA
Downstream 100 bases:
>100_bases TGTCGGTTCTGGCGATCATTCCGGCCCGTGGCGGGTCAAAGGGCGTGCCCGGAAAGAATCTGCGGTTGCTGGCTGGCAAG CCCTTGATCTCGTGGAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MADGMAGSRVASWRSFGAGRWLVLAVGVVLALYSAAFSFALIFSGRQPAVTMALVPWHSTAPTAIADRLMLAAAQEKFRE AGGRDAPTAAAMTALLSRVGPSLPPEKAAPIRELALEGLSQSALNSAALRQLAFLEKDRAKRKHLLDLALRVSRRDVLAG VQSAEIKFLDNEADAGLADLDRALTVSEKVDDLVLPIILQASSDPEALAQIRRRVAKNPLWIERLLRYGIDNPVFAPRVA DIVSAIPARSTARAQGYGQQLIDILVSAREYPAAFKVYDVYSPTRQAVERMGGGAFRPIDWQLTENYDAGGRELGAREVD IFASPERQGEFARILMRSRPGSYSLSLRAREVEAAEGRLTFNMLCLDEKQERQGASLSLPLRQGPMRFDYSVPPTGCGYQ WLILGIGAELDSAAALIDSVTLSRTPARVAGPGS
Sequences:
>Translated_434_residues MADGMAGSRVASWRSFGAGRWLVLAVGVVLALYSAAFSFALIFSGRQPAVTMALVPWHSTAPTAIADRLMLAAAQEKFRE AGGRDAPTAAAMTALLSRVGPSLPPEKAAPIRELALEGLSQSALNSAALRQLAFLEKDRAKRKHLLDLALRVSRRDVLAG VQSAEIKFLDNEADAGLADLDRALTVSEKVDDLVLPIILQASSDPEALAQIRRRVAKNPLWIERLLRYGIDNPVFAPRVA DIVSAIPARSTARAQGYGQQLIDILVSAREYPAAFKVYDVYSPTRQAVERMGGGAFRPIDWQLTENYDAGGRELGAREVD IFASPERQGEFARILMRSRPGSYSLSLRAREVEAAEGRLTFNMLCLDEKQERQGASLSLPLRQGPMRFDYSVPPTGCGYQ WLILGIGAELDSAAALIDSVTLSRTPARVAGPGS >Mature_433_residues ADGMAGSRVASWRSFGAGRWLVLAVGVVLALYSAAFSFALIFSGRQPAVTMALVPWHSTAPTAIADRLMLAAAQEKFREA GGRDAPTAAAMTALLSRVGPSLPPEKAAPIRELALEGLSQSALNSAALRQLAFLEKDRAKRKHLLDLALRVSRRDVLAGV QSAEIKFLDNEADAGLADLDRALTVSEKVDDLVLPIILQASSDPEALAQIRRRVAKNPLWIERLLRYGIDNPVFAPRVAD IVSAIPARSTARAQGYGQQLIDILVSAREYPAAFKVYDVYSPTRQAVERMGGGAFRPIDWQLTENYDAGGRELGAREVDI FASPERQGEFARILMRSRPGSYSLSLRAREVEAAEGRLTFNMLCLDEKQERQGASLSLPLRQGPMRFDYSVPPTGCGYQW LILGIGAELDSAAALIDSVTLSRTPARVAGPGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46969; Mature: 46838
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGMAGSRVASWRSFGAGRWLVLAVGVVLALYSAAFSFALIFSGRQPAVTMALVPWHST CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCC APTAIADRLMLAAAQEKFREAGGRDAPTAAAMTALLSRVGPSLPPEKAAPIRELALEGLS CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH QSALNSAALRQLAFLEKDRAKRKHLLDLALRVSRRDVLAGVQSAEIKFLDNEADAGLADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH DRALTVSEKVDDLVLPIILQASSDPEALAQIRRRVAKNPLWIERLLRYGIDNPVFAPRVA HHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH DIVSAIPARSTARAQGYGQQLIDILVSAREYPAAFKVYDVYSPTRQAVERMGGGAFRPID HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCC WQLTENYDAGGRELGAREVDIFASPERQGEFARILMRSRPGSYSLSLRAREVEAAEGRLT EEEECCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHCCCCEE FNMLCLDEKQERQGASLSLPLRQGPMRFDYSVPPTGCGYQWLILGIGAELDSAAALIDSV EEEEECCCHHHHCCCCEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH TLSRTPARVAGPGS HHCCCCCCCCCCCC >Mature Secondary Structure ADGMAGSRVASWRSFGAGRWLVLAVGVVLALYSAAFSFALIFSGRQPAVTMALVPWHST CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCC APTAIADRLMLAAAQEKFREAGGRDAPTAAAMTALLSRVGPSLPPEKAAPIRELALEGLS CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH QSALNSAALRQLAFLEKDRAKRKHLLDLALRVSRRDVLAGVQSAEIKFLDNEADAGLADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH DRALTVSEKVDDLVLPIILQASSDPEALAQIRRRVAKNPLWIERLLRYGIDNPVFAPRVA HHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH DIVSAIPARSTARAQGYGQQLIDILVSAREYPAAFKVYDVYSPTRQAVERMGGGAFRPID HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCC WQLTENYDAGGRELGAREVDIFASPERQGEFARILMRSRPGSYSLSLRAREVEAAEGRLT EEEECCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHCCCCEE FNMLCLDEKQERQGASLSLPLRQGPMRFDYSVPPTGCGYQWLILGIGAELDSAAALIDSV EEEEECCCHHHHCCCCEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHH TLSRTPARVAGPGS HHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA