| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487056
Identifier: 103487056
GI number: 103487056
Start: 1643120
End: 1644007
Strand: Reverse
Name: 103487056
Synonym: Sala_1571
Alternate gene names: NA
Gene position: 1644007-1643120 (Counterclockwise)
Preceding gene: 103487057
Following gene: 103487051
Centisome position: 49.15
GC content: 57.21
Gene sequence:
>888_bases ATGGCGTCGCTGTCGAAACGGGTGCTGTGGCATATCAACCGGTCGCCGCTCAGGCATGGGGTAAAGACGATCAAGCGGCT GGCGGGGCAGGGAGATATTTCTCATCGCCGACGGCTCGCGGAACTATTTCCAGCCGACGATCATGTCGAGAAGATTGTGG CTGACTTCGAACGCGATGGCTTTGTCCTGCTCGATGATTATGTTTCAACGGAGCTGCGTACCCGACTGTTGGAGGCGACC GAACAACTCATCGCGGCGGATGACGCTTCGGAGCGGATCTTCGTCAGCGGCAAAGGCAGTCTTTGGGCACACCTTGTGGA GCGTGCAATGGAGGATGGCCAGTTGCCGTCCAGCCATTTCTATGCGCGATTTGCCTTGCAGAGCGAAATCGTGCGGCTTT TGACGCGCTTGTTCGGCATGGTCCCCCGTCTTGATTATGTGACGGTCACCCATTCTTTGCCGATGGCGGGCGAACCGGCC TATTCGCAACTCTGGCATCGTGATCATGACGATGTTCGGGTGATAAAATTGTTTGTCTATCTGACCGACGTGAACACGGT CGAGGATGGCCCCTTCTCGTTCCTTCCCGCCCAGATTTCGGACAGGCTCGGCTTTTCGTTAAAAAGCCATCGTCGCGACG ATCAGCTACCGACCAGCATCAACGTCGCCAGTGCAAAACGGGAAATTGTGGGGCCGCGGTTCACATGCTTCATGGTCGAA ACGTCGCGCTGTCTGCACATGGGCAGCCGTGTAGCGGAAGGGCACCAGCGGCTGATGTATACGGCAACCTATTTTGCGCC GCCGCGCGTTTTTCCGGAACCGCGCCGGGCCTTTTTCAGAGCAGATCCCGCAGCAGACGTGATCGAACGAGCACTTCTGA TTCCCTGA
Upstream 100 bases:
>100_bases CGCGCCAGGCTTTGGCAACATATTCGGTCGCTGGCGCAAAACAGGAACGCATGAGCATATGGGTATAAGGCCGGCAATTC TATCGAGAAGGGAATGGACT
Downstream 100 bases:
>100_bases TCTTGGATAACTGGTCAGAATCTGCGATATTTCAGGAAGGCGCGTGCCGAATATTGGGCAAAATACCATGCGGCGGCCAA GGGCGACAGTTTCTCGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MASLSKRVLWHINRSPLRHGVKTIKRLAGQGDISHRRRLAELFPADDHVEKIVADFERDGFVLLDDYVSTELRTRLLEAT EQLIAADDASERIFVSGKGSLWAHLVERAMEDGQLPSSHFYARFALQSEIVRLLTRLFGMVPRLDYVTVTHSLPMAGEPA YSQLWHRDHDDVRVIKLFVYLTDVNTVEDGPFSFLPAQISDRLGFSLKSHRRDDQLPTSINVASAKREIVGPRFTCFMVE TSRCLHMGSRVAEGHQRLMYTATYFAPPRVFPEPRRAFFRADPAADVIERALLIP
Sequences:
>Translated_295_residues MASLSKRVLWHINRSPLRHGVKTIKRLAGQGDISHRRRLAELFPADDHVEKIVADFERDGFVLLDDYVSTELRTRLLEAT EQLIAADDASERIFVSGKGSLWAHLVERAMEDGQLPSSHFYARFALQSEIVRLLTRLFGMVPRLDYVTVTHSLPMAGEPA YSQLWHRDHDDVRVIKLFVYLTDVNTVEDGPFSFLPAQISDRLGFSLKSHRRDDQLPTSINVASAKREIVGPRFTCFMVE TSRCLHMGSRVAEGHQRLMYTATYFAPPRVFPEPRRAFFRADPAADVIERALLIP >Mature_294_residues ASLSKRVLWHINRSPLRHGVKTIKRLAGQGDISHRRRLAELFPADDHVEKIVADFERDGFVLLDDYVSTELRTRLLEATE QLIAADDASERIFVSGKGSLWAHLVERAMEDGQLPSSHFYARFALQSEIVRLLTRLFGMVPRLDYVTVTHSLPMAGEPAY SQLWHRDHDDVRVIKLFVYLTDVNTVEDGPFSFLPAQISDRLGFSLKSHRRDDQLPTSINVASAKREIVGPRFTCFMVET SRCLHMGSRVAEGHQRLMYTATYFAPPRVFPEPRRAFFRADPAADVIERALLIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33655; Mature: 33524
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLSKRVLWHINRSPLRHGVKTIKRLAGQGDISHRRRLAELFPADDHVEKIVADFERDG CCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCC FVLLDDYVSTELRTRLLEATEQLIAADDASERIFVSGKGSLWAHLVERAMEDGQLPSSHF EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHH YARFALQSEIVRLLTRLFGMVPRLDYVTVTHSLPMAGEPAYSQLWHRDHDDVRVIKLFVY HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHEEHH LTDVNTVEDGPFSFLPAQISDRLGFSLKSHRRDDQLPTSINVASAKREIVGPRFTCFMVE HCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEE TSRCLHMGSRVAEGHQRLMYTATYFAPPRVFPEPRRAFFRADPAADVIERALLIP HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure ASLSKRVLWHINRSPLRHGVKTIKRLAGQGDISHRRRLAELFPADDHVEKIVADFERDG CCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCC FVLLDDYVSTELRTRLLEATEQLIAADDASERIFVSGKGSLWAHLVERAMEDGQLPSSHF EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHH YARFALQSEIVRLLTRLFGMVPRLDYVTVTHSLPMAGEPAYSQLWHRDHDDVRVIKLFVY HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHEEHH LTDVNTVEDGPFSFLPAQISDRLGFSLKSHRRDDQLPTSINVASAKREIVGPRFTCFMVE HCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEE TSRCLHMGSRVAEGHQRLMYTATYFAPPRVFPEPRRAFFRADPAADVIERALLIP HHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA