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The map label for this gene is ytfM [C]

Identifier: 103487047

GI number: 103487047

Start: 1629898

End: 1632237

Strand: Reverse

Name: ytfM [C]

Synonym: Sala_1562

Alternate gene names: 103487047

Gene position: 1632237-1629898 (Counterclockwise)

Preceding gene: 103487048

Following gene: 103487046

Centisome position: 48.79

GC content: 66.62

Gene sequence:

>2340_bases
ATGCAAAAATCTGAAAAATCCTGTGATTCTTCGTGCCGCCGACTGGCGGGAATAGGGTCGCTGCTGGTCGGCGCCGCGGC
CTTGCCGGCCCTGCTGCTTGCGCCGTCGGTGATCGCGCAGGAACAAGAGAAGTCGGTATCCCGAACCGGCGTCGCGGCCG
CGGCCGACGATCCGATCGCATCGCCATCGCCGCCACCGCCCGAGGCGGATCTGCCCGAGGTCGAACCGATCATCGCCGAC
GACGAGTTTGAAAAGGCGATCCCGCCGATCAGCGCCGAGGAGGATCCCGAACTTGACCGGCCGCTCGAATCGATCGCCGA
GGTCGAGCGGCGGCAGGCCGCCGACGCGGCGCGGCGCGGGAATCAGGACGGGGATGAAGCCGAAACCGCCGGCGGCGCCG
CAACGCCCGCGGTCGATGGCGGTCCCGTTCCGGCCCTTGCCGACGGCGATAGCGTCGAGGCGATTGGCGACGCGCCGATA
AGCGACATCGAACTCGCGGCGCTGCTCCCCCCGCTCGACAATTTCGATGTCGAACCCGTCGAATTCGCCGAGGCGGAAGA
GGAGGATGATGGTCGCGAGCTGGCCTATCAGGTTCGGGTCAACGGGCTGGACGCGGCCGACGACGGCACCAGCGTGGATC
TTGCCGACATGTTCGGCGATCTGTCGGCGCTTTACGATGGTGACGGCAAGGCCGACAATGCGGCGATGATCCGCGCGCGT
CTGTCCGCCGATGGCGAGCTGATGCAGCGCATCCTGGCGTCGGAGGGCTATTATGACGCGGTCGTCGAGACGCGCATCGA
GCGCGGGCCGCGCGAGGAAGGGCAGGACCGCGGCAGCCGTCCGATCACCGCGATCATCGACGTGACGCCCGGACAGCGAT
ACACGCTCTCCGACATCGTGATCGACGCCGCCCCGACGATCCCCCCCCGCCTGATCGCCGACAATTTCCCGCTGAGCGTC
GGTGAGCCCATCGTCGCGCAGCGGATTCAGGGCGCCGAGGCGGCGATCGCGCTCAAGCTGCCCGAAGAAGGCTATCCGTT
CGCGCAGGTAGGCCAGCGCGACGTCCTGCTCGACCCGGCGACGGGAGAAGGCGTCTACACGCTGCCTGTCGATATCGGCA
AACGATCGCGCTTTGGCGGCATCGAGACGACGGGCGACCTTGCTTTCGATGCCGATCATGTCGCGGTGCTCGCACGCTTC
AAGCGCGGCGACCTTTACGACAGCCGCAAGGTCGATGACCTCCGGCAGGCGCTCGTCGCTACCGGGCTCTTCTCGACCGT
CGCCGCCGAACCGCAGCCGACGGGTGAAAGCGCGGGCGACGGCACCGAATATGTGACCATGCTGGTGACACAGCAGGCGG
GGCCACCACGCACGATCGCGGCGAGCGCGGGTTATGGCACGGGCGAGGGGCTTCGGGTCGAGGGAAGCTGGACGCACCGC
AACATGTTCCCCCCCGAAGGCGCTCTGACCTTTCGCGGCGTCATCGGCACGCAGGAACAGGGGATCGGTGCGACGCTGCG
GCGGTCGAACGCCGGTCGGCGCGACCGGACGCTGGAACTCGTCGCCGAGGCAAAGCGCAGCAATTATGAGGCCTTCGAGG
CGTTGACCGGCCGCGTCGGCGCGCGCATCAGCTATGATTCGACGCCGATCTGGCAAAAGAAGTTCACCTATGCCTATGGC
GTCGAGCTCATTGCCACGCGCGAGGATGATTATGATTTTGCGACGGGCGAGCGGTCCTTTGACTTCTACACCATCCTGGG
GCTGAGCGGGCAGGTCGGGATAGACCGTACCGACAACTTGCTCGACCCGACCAAGGGGTTTCGCATCACGTCGCTGATTC
AGCCTGAAGGCTCGCTTTCGGGACGCTTCTCCCCCTATGCGCGGCTTCGCACCGACATCAGCGGCTATTATCCGATGACC
GACAGCATCGTGCTCGCGGGGCGGGTGCGCTTCGGGTCGATCCTCGGTGCCGCGCGCGAACGGCTCGCGCCGTCGCGGCG
CTTTTATGCGGGCGGCGGCGGGTCGGTGCGCGGCTTCGGTTATCAGGAGCTAGGACCCAAAGACCCCAACAATGATCCGA
TCGGCGGCCGCAGCGTCAACGAGGTCGCGGTCGAGGCGCGCTATCGCTTCGGCGATTTCGGCGTCGTCGGCTTCGTCGAT
GCGGGGCAGGTTTACCGCAGTTCGGCGCCGACCTTTCAGGATCTGCGCTTCGGCGCCGGCATCGGCGCGCGCTATTACAC
CAATTTCGGGCCGATGCGCTTCGACATCGCGACGCCGATCGCGCGCAAGCCCGGCGAAGCGCGCGTCAGCGTCTATGTGT
CGATCGGGCAGGCCTTCTGA

Upstream 100 bases:

>100_bases
GGAACTGTCCCAACGCCGGAGCGTTGGCACCCGGCGAAGGGGAGAAACGGGTTGCACAGCCAAAGCTCTGAAGCCACAAG
TCTTCTTCGGTGGCCAGCAG

Downstream 100 bases:

>100_bases
TGACCGAGGACGCACCCGCCGCCGAAACGGCGCCGGTTGCGGCGCGGAGCTGGCCGCGCGCGATCCTGCGCGGCACGGGC
TATGCGCTGCTTGGCCTCGT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 779

Protein sequence:

>779_residues
MQKSEKSCDSSCRRLAGIGSLLVGAAALPALLLAPSVIAQEQEKSVSRTGVAAAADDPIASPSPPPPEADLPEVEPIIAD
DEFEKAIPPISAEEDPELDRPLESIAEVERRQAADAARRGNQDGDEAETAGGAATPAVDGGPVPALADGDSVEAIGDAPI
SDIELAALLPPLDNFDVEPVEFAEAEEEDDGRELAYQVRVNGLDAADDGTSVDLADMFGDLSALYDGDGKADNAAMIRAR
LSADGELMQRILASEGYYDAVVETRIERGPREEGQDRGSRPITAIIDVTPGQRYTLSDIVIDAAPTIPPRLIADNFPLSV
GEPIVAQRIQGAEAAIALKLPEEGYPFAQVGQRDVLLDPATGEGVYTLPVDIGKRSRFGGIETTGDLAFDADHVAVLARF
KRGDLYDSRKVDDLRQALVATGLFSTVAAEPQPTGESAGDGTEYVTMLVTQQAGPPRTIAASAGYGTGEGLRVEGSWTHR
NMFPPEGALTFRGVIGTQEQGIGATLRRSNAGRRDRTLELVAEAKRSNYEAFEALTGRVGARISYDSTPIWQKKFTYAYG
VELIATREDDYDFATGERSFDFYTILGLSGQVGIDRTDNLLDPTKGFRITSLIQPEGSLSGRFSPYARLRTDISGYYPMT
DSIVLAGRVRFGSILGAARERLAPSRRFYAGGGGSVRGFGYQELGPKDPNNDPIGGRSVNEVAVEARYRFGDFGVVGFVD
AGQVYRSSAPTFQDLRFGAGIGARYYTNFGPMRFDIATPIARKPGEARVSVYVSIGQAF

Sequences:

>Translated_779_residues
MQKSEKSCDSSCRRLAGIGSLLVGAAALPALLLAPSVIAQEQEKSVSRTGVAAAADDPIASPSPPPPEADLPEVEPIIAD
DEFEKAIPPISAEEDPELDRPLESIAEVERRQAADAARRGNQDGDEAETAGGAATPAVDGGPVPALADGDSVEAIGDAPI
SDIELAALLPPLDNFDVEPVEFAEAEEEDDGRELAYQVRVNGLDAADDGTSVDLADMFGDLSALYDGDGKADNAAMIRAR
LSADGELMQRILASEGYYDAVVETRIERGPREEGQDRGSRPITAIIDVTPGQRYTLSDIVIDAAPTIPPRLIADNFPLSV
GEPIVAQRIQGAEAAIALKLPEEGYPFAQVGQRDVLLDPATGEGVYTLPVDIGKRSRFGGIETTGDLAFDADHVAVLARF
KRGDLYDSRKVDDLRQALVATGLFSTVAAEPQPTGESAGDGTEYVTMLVTQQAGPPRTIAASAGYGTGEGLRVEGSWTHR
NMFPPEGALTFRGVIGTQEQGIGATLRRSNAGRRDRTLELVAEAKRSNYEAFEALTGRVGARISYDSTPIWQKKFTYAYG
VELIATREDDYDFATGERSFDFYTILGLSGQVGIDRTDNLLDPTKGFRITSLIQPEGSLSGRFSPYARLRTDISGYYPMT
DSIVLAGRVRFGSILGAARERLAPSRRFYAGGGGSVRGFGYQELGPKDPNNDPIGGRSVNEVAVEARYRFGDFGVVGFVD
AGQVYRSSAPTFQDLRFGAGIGARYYTNFGPMRFDIATPIARKPGEARVSVYVSIGQAF
>Mature_779_residues
MQKSEKSCDSSCRRLAGIGSLLVGAAALPALLLAPSVIAQEQEKSVSRTGVAAAADDPIASPSPPPPEADLPEVEPIIAD
DEFEKAIPPISAEEDPELDRPLESIAEVERRQAADAARRGNQDGDEAETAGGAATPAVDGGPVPALADGDSVEAIGDAPI
SDIELAALLPPLDNFDVEPVEFAEAEEEDDGRELAYQVRVNGLDAADDGTSVDLADMFGDLSALYDGDGKADNAAMIRAR
LSADGELMQRILASEGYYDAVVETRIERGPREEGQDRGSRPITAIIDVTPGQRYTLSDIVIDAAPTIPPRLIADNFPLSV
GEPIVAQRIQGAEAAIALKLPEEGYPFAQVGQRDVLLDPATGEGVYTLPVDIGKRSRFGGIETTGDLAFDADHVAVLARF
KRGDLYDSRKVDDLRQALVATGLFSTVAAEPQPTGESAGDGTEYVTMLVTQQAGPPRTIAASAGYGTGEGLRVEGSWTHR
NMFPPEGALTFRGVIGTQEQGIGATLRRSNAGRRDRTLELVAEAKRSNYEAFEALTGRVGARISYDSTPIWQKKFTYAYG
VELIATREDDYDFATGERSFDFYTILGLSGQVGIDRTDNLLDPTKGFRITSLIQPEGSLSGRFSPYARLRTDISGYYPMT
DSIVLAGRVRFGSILGAARERLAPSRRFYAGGGGSVRGFGYQELGPKDPNNDPIGGRSVNEVAVEARYRFGDFGVVGFVD
AGQVYRSSAPTFQDLRFGAGIGARYYTNFGPMRFDIATPIARKPGEARVSVYVSIGQAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=542, Percent_Identity=24.3542435424354, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 83141; Mature: 83141

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSEKSCDSSCRRLAGIGSLLVGAAALPALLLAPSVIAQEQEKSVSRTGVAAAADDPIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
SPSPPPPEADLPEVEPIIADDEFEKAIPPISAEEDPELDRPLESIAEVERRQAADAARRG
CCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NQDGDEAETAGGAATPAVDGGPVPALADGDSVEAIGDAPISDIELAALLPPLDNFDVEPV
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCH
EFAEAEEEDDGRELAYQVRVNGLDAADDGTSVDLADMFGDLSALYDGDGKADNAAMIRAR
HHCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEE
LSADGELMQRILASEGYYDAVVETRIERGPREEGQDRGSRPITAIIDVTPGQRYTLSDIV
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCEEEHHHEE
IDAAPTIPPRLIADNFPLSVGEPIVAQRIQGAEAAIALKLPEEGYPFAQVGQRDVLLDPA
EECCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCEEECCC
TGEGVYTLPVDIGKRSRFGGIETTGDLAFDADHVAVLARFKRGDLYDSRKVDDLRQALVA
CCCCEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TGLFSTVAAEPQPTGESAGDGTEYVTMLVTQQAGPPRTIAASAGYGTGEGLRVEGSWTHR
HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCEEEECCCCCC
NMFPPEGALTFRGVIGTQEQGIGATLRRSNAGRRDRTLELVAEAKRSNYEAFEALTGRVG
CCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
ARISYDSTPIWQKKFTYAYGVELIATREDDYDFATGERSFDFYTILGLSGQVGIDRTDNL
CEEECCCCCCHHHHCCHHHCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
LDPTKGFRITSLIQPEGSLSGRFSPYARLRTDISGYYPMTDSIVLAGRVRFGSILGAARE
CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH
RLAPSRRFYAGGGGSVRGFGYQELGPKDPNNDPIGGRSVNEVAVEARYRFGDFGVVGFVD
HCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHEEHEEEECCCCEEEEEC
AGQVYRSSAPTFQDLRFGAGIGARYYTNFGPMRFDIATPIARKPGEARVSVYVSIGQAF
CCHHHHCCCCCHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MQKSEKSCDSSCRRLAGIGSLLVGAAALPALLLAPSVIAQEQEKSVSRTGVAAAADDPIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
SPSPPPPEADLPEVEPIIADDEFEKAIPPISAEEDPELDRPLESIAEVERRQAADAARRG
CCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NQDGDEAETAGGAATPAVDGGPVPALADGDSVEAIGDAPISDIELAALLPPLDNFDVEPV
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCH
EFAEAEEEDDGRELAYQVRVNGLDAADDGTSVDLADMFGDLSALYDGDGKADNAAMIRAR
HHCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEE
LSADGELMQRILASEGYYDAVVETRIERGPREEGQDRGSRPITAIIDVTPGQRYTLSDIV
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCEEEHHHEE
IDAAPTIPPRLIADNFPLSVGEPIVAQRIQGAEAAIALKLPEEGYPFAQVGQRDVLLDPA
EECCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCEEECCC
TGEGVYTLPVDIGKRSRFGGIETTGDLAFDADHVAVLARFKRGDLYDSRKVDDLRQALVA
CCCCEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TGLFSTVAAEPQPTGESAGDGTEYVTMLVTQQAGPPRTIAASAGYGTGEGLRVEGSWTHR
HHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCEEEECCCCCC
NMFPPEGALTFRGVIGTQEQGIGATLRRSNAGRRDRTLELVAEAKRSNYEAFEALTGRVG
CCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
ARISYDSTPIWQKKFTYAYGVELIATREDDYDFATGERSFDFYTILGLSGQVGIDRTDNL
CEEECCCCCCHHHHCCHHHCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
LDPTKGFRITSLIQPEGSLSGRFSPYARLRTDISGYYPMTDSIVLAGRVRFGSILGAARE
CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH
RLAPSRRFYAGGGGSVRGFGYQELGPKDPNNDPIGGRSVNEVAVEARYRFGDFGVVGFVD
HCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHEEHEEEECCCCEEEEEC
AGQVYRSSAPTFQDLRFGAGIGARYYTNFGPMRFDIATPIARKPGEARVSVYVSIGQAF
CCHHHHCCCCCHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]