| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487041
Identifier: 103487041
GI number: 103487041
Start: 1621504
End: 1622208
Strand: Reverse
Name: 103487041
Synonym: Sala_1556
Alternate gene names: NA
Gene position: 1622208-1621504 (Counterclockwise)
Preceding gene: 103487042
Following gene: 103487040
Centisome position: 48.49
GC content: 71.77
Gene sequence:
>705_bases ATGCCTGACGGCGATCAGGCAGCGGTGGCGGCGACATTGCTTCACGGCCCGCGGCACCTGCCGCCCGGCCTGTTCGCGGG GACCGAGGCGACGGTGCTGCGCGGGCTGCGCGTCCACGCCAACACCATCTCGCACGCGCGCCTTGTCGCGCTCGAAGAGA CATTTCCGCGCCTCCGCGAGCATCTCGGCGCTGCGGACTTCAATCGCCTGTCGCGCGCCTTTGTCGAAGCGGGCGGGGCG GAGCGGCGCGGGCTCGCCGACATCGGCGCGGGATTTGCCGATTGGCTCGACGATGCGCTCGCTGCCGACATTGCGCGCGT CGAATGGGCATGGCTCGAAAGCTATCATGCCGCCGACGCTGGCGCGCTGCGGCTCGCCGATCTCGCCGGGGATGACGAGG CCGCGCTGCTGGCGAGGCCGGTTCGCCGTCATCCCGCCGCAAGGATCGTGCCGCTTGCGACCGGCGCCGCGCCGTGCCTC GACCCCGCCTTCGCGCCCGACACGGCGGCGATCCTCATAACCCGACCCGATGCCGAGGTCCGGTTGTTCGCCGCGCATCC GGCCGATGCCGCGGCGCTGGACGCCGCCGCACAATTCTCGCCGCTCGGCAGCCTGATCGCGCTGCTCGATGAAGAGCATC CCGGCGGCGGCGGCGCGATCGCGGCGCTGATCGACGCCGGGGCTTTTGAAGAGGTGGCTCCATGA
Upstream 100 bases:
>100_bases GGGCCGTGCCCCGTTCTTGTCGAATGGGACAGCGATGTGCCCGAATACACCGTGTTGATGGCCGAGGCAGCAAGGGCCGA TGCCTTGCTGGAGCCCGTTG
Downstream 100 bases:
>100_bases AACGCTTGGCTGGCCTTTATGACCGCGCGGTCCGATGGCGTCGTCGCGGATTCACGCGCTATCGCTGAATCGACATGCTG CGCCGCCGGCGCGACGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MPDGDQAAVAATLLHGPRHLPPGLFAGTEATVLRGLRVHANTISHARLVALEETFPRLREHLGAADFNRLSRAFVEAGGA ERRGLADIGAGFADWLDDALAADIARVEWAWLESYHAADAGALRLADLAGDDEAALLARPVRRHPAARIVPLATGAAPCL DPAFAPDTAAILITRPDAEVRLFAAHPADAAALDAAAQFSPLGSLIALLDEEHPGGGGAIAALIDAGAFEEVAP
Sequences:
>Translated_234_residues MPDGDQAAVAATLLHGPRHLPPGLFAGTEATVLRGLRVHANTISHARLVALEETFPRLREHLGAADFNRLSRAFVEAGGA ERRGLADIGAGFADWLDDALAADIARVEWAWLESYHAADAGALRLADLAGDDEAALLARPVRRHPAARIVPLATGAAPCL DPAFAPDTAAILITRPDAEVRLFAAHPADAAALDAAAQFSPLGSLIALLDEEHPGGGGAIAALIDAGAFEEVAP >Mature_233_residues PDGDQAAVAATLLHGPRHLPPGLFAGTEATVLRGLRVHANTISHARLVALEETFPRLREHLGAADFNRLSRAFVEAGGAE RRGLADIGAGFADWLDDALAADIARVEWAWLESYHAADAGALRLADLAGDDEAALLARPVRRHPAARIVPLATGAAPCLD PAFAPDTAAILITRPDAEVRLFAAHPADAAALDAAAQFSPLGSLIALLDEEHPGGGGAIAALIDAGAFEEVAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24218; Mature: 24087
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDGDQAAVAATLLHGPRHLPPGLFAGTEATVLRGLRVHANTISHARLVALEETFPRLRE CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HLGAADFNRLSRAFVEAGGAERRGLADIGAGFADWLDDALAADIARVEWAWLESYHAADA HCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GALRLADLAGDDEAALLARPVRRHPAARIVPLATGAAPCLDPAFAPDTAAILITRPDAEV CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCE RLFAAHPADAAALDAAAQFSPLGSLIALLDEEHPGGGGAIAALIDAGAFEEVAP EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCC >Mature Secondary Structure PDGDQAAVAATLLHGPRHLPPGLFAGTEATVLRGLRVHANTISHARLVALEETFPRLRE CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HLGAADFNRLSRAFVEAGGAERRGLADIGAGFADWLDDALAADIARVEWAWLESYHAADA HCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GALRLADLAGDDEAALLARPVRRHPAARIVPLATGAAPCLDPAFAPDTAAILITRPDAEV CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCE RLFAAHPADAAALDAAAQFSPLGSLIALLDEEHPGGGGAIAALIDAGAFEEVAP EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA