Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487039

Identifier: 103487039

GI number: 103487039

Start: 1620881

End: 1621138

Strand: Reverse

Name: 103487039

Synonym: Sala_1554

Alternate gene names: NA

Gene position: 1621138-1620881 (Counterclockwise)

Preceding gene: 103487040

Following gene: 103487036

Centisome position: 48.46

GC content: 65.89

Gene sequence:

>258_bases
TTGATCGATGGACTGGTTGGCGAAGCGGAGCCGGTGCCGCCGAGGAAATTGGTTCGGGGGCTGCTCTGGACGGCGACCGG
CTGGCTTGTCGGCGCAGCGCTGTTCCTGTGGCTCAGGTCGGGTGCGGCGGGCGTATCGATCGTTGCGCTGCATTGCGTCG
ACGAGAATCTCATTCACATCGCGCTGTGGCACGGTTTGGCCGTCGTCGTCTCGGCGGTCGCCGGGCGGCTGATTCTGCCA
CGCTTCCTGCGCTGGTGA

Upstream 100 bases:

>100_bases
CCAGAGCAAGTCTCTGGTCAAGGTCAACATTCACCGCGGCCTCAAAAAGCTCACGCAACTGGTTGAACGTGGATGAAATA
AACAGGGTTTCGATCGAAGT

Downstream 100 bases:

>100_bases
ACATCAGGGCCAGAAGCCTATGCCTTTCGCGACAGCCAGTCGGTTCGATACCAGTCGACAAAGGCGGGGATACCGACCGA
AATCGGCGTCGTCGGCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MIDGLVGEAEPVPPRKLVRGLLWTATGWLVGAALFLWLRSGAAGVSIVALHCVDENLIHIALWHGLAVVVSAVAGRLILP
RFLRW

Sequences:

>Translated_85_residues
MIDGLVGEAEPVPPRKLVRGLLWTATGWLVGAALFLWLRSGAAGVSIVALHCVDENLIHIALWHGLAVVVSAVAGRLILP
RFLRW
>Mature_85_residues
MIDGLVGEAEPVPPRKLVRGLLWTATGWLVGAALFLWLRSGAAGVSIVALHCVDENLIHIALWHGLAVVVSAVAGRLILP
RFLRW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9187; Mature: 9187

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDGLVGEAEPVPPRKLVRGLLWTATGWLVGAALFLWLRSGAAGVSIVALHCVDENLIHI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHH
ALWHGLAVVVSAVAGRLILPRFLRW
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDGLVGEAEPVPPRKLVRGLLWTATGWLVGAALFLWLRSGAAGVSIVALHCVDENLIHI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCHHHH
ALWHGLAVVVSAVAGRLILPRFLRW
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA