| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487031
Identifier: 103487031
GI number: 103487031
Start: 1612866
End: 1613825
Strand: Reverse
Name: 103487031
Synonym: Sala_1546
Alternate gene names: NA
Gene position: 1613825-1612866 (Counterclockwise)
Preceding gene: 103487032
Following gene: 103487030
Centisome position: 48.24
GC content: 66.77
Gene sequence:
>960_bases ATGGATAATCTGACGCACAGTCTGGTCGGCGCCTTGCTGGGCCAGATGGGCCTCAAGAAGAAGACCGGGCTGGCGATGCC GACGCTGATTCTGGCGGCGAACCTGCCTGACATCGACGCAGCCTGCCTGTTCTGGCTCGAAGGTGTGCAGCATCTGGGCT TTCGGCGCGGGATTACGCATGGGCCGATCGCGATGCTGGCGCTGCCGATCATCCTCTGGGCGCTGGTGATGTCGTTCGAC CGCTGGCAGGAACGGCGCGGCAAGCGGCCCGTCGATCGCCTTCCGCTTCATCGCGGCTGGCTGCTTGCGCTCGCCTATAT CGGCTGCCTCAGCCATCCGGCGCTCGACTGGCTCAACAATTATGGCATCCGCCTGCTCGAACCCTTTTCCGCGCGATGGT TCTATGGCGACAGCCTCTTCATCATCGATCTGTGGATCTGGATCGCGCTGGCCGTTTCGCTGTGGCTGTCGTTTCGCCGC GAGCGCCGCGGCGCGGCGAACTGGCGACAGCCCGCGTGGACCGGTTTCATGGTCGTTTCGGGCTATATTTTCGTGAACGG CCTGATCACCGGCGCGGCGGAGCGCATGGCGTCGGAGGCGCTGGCCGCGGGCGGCAAGGCCGACGCGCTCGTCGTTGCGA GCCCGCCGCCGCTCGCCTTCTGGCGGCGCGACATTTTCTGGCGCACCGCCGAACGTTATGGCACCGCGCGCTTCACGCCC GGCGTCGGCGGCTCTGTCGACCTGACCGGTGCCCCGACGGGCATGGACGATCCGCGGCTGGCAATGTGGGTCAAGGGCGA CCCGGCCGCGCGCGCCTTTCTGTTCTGGGCGCGGATGCCGGTCGCTGAACGCGATGGCGACGCACTGGTGCTGCGCGACC AGCGTTTCATGCATCCGCTGGCCGAAGAGCGCTTTCAGGTTCGCCTGACCGCGCCCGATACCGCCAGCGAACCCCTATAG
Upstream 100 bases:
>100_bases CGCAGCCGAAGGCAAAACCGCCGACCTGCAAAGCCTGCTCAAGAAGGGACAAACCTGGACAGTGACCGAAAAGGGCTCCG AGCTCTGACGCGTCCGCACC
Downstream 100 bases:
>100_bases ATCGCCCGCGCGTGTGACGTCATGGCCGCATCGTTTCAGACGATTGTCAGCCGTCCGCCTTTGAGGCAGGAAGGGGCTAT GAACACGCATGTCAGCCCCC
Product: membrane-bound metal-dependent hydrolase
Products: NA
Alternate protein names: Hydrolase
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MDNLTHSLVGALLGQMGLKKKTGLAMPTLILAANLPDIDAACLFWLEGVQHLGFRRGITHGPIAMLALPIILWALVMSFD RWQERRGKRPVDRLPLHRGWLLALAYIGCLSHPALDWLNNYGIRLLEPFSARWFYGDSLFIIDLWIWIALAVSLWLSFRR ERRGAANWRQPAWTGFMVVSGYIFVNGLITGAAERMASEALAAGGKADALVVASPPPLAFWRRDIFWRTAERYGTARFTP GVGGSVDLTGAPTGMDDPRLAMWVKGDPAARAFLFWARMPVAERDGDALVLRDQRFMHPLAEERFQVRLTAPDTASEPL
Sequences:
>Translated_319_residues MDNLTHSLVGALLGQMGLKKKTGLAMPTLILAANLPDIDAACLFWLEGVQHLGFRRGITHGPIAMLALPIILWALVMSFD RWQERRGKRPVDRLPLHRGWLLALAYIGCLSHPALDWLNNYGIRLLEPFSARWFYGDSLFIIDLWIWIALAVSLWLSFRR ERRGAANWRQPAWTGFMVVSGYIFVNGLITGAAERMASEALAAGGKADALVVASPPPLAFWRRDIFWRTAERYGTARFTP GVGGSVDLTGAPTGMDDPRLAMWVKGDPAARAFLFWARMPVAERDGDALVLRDQRFMHPLAEERFQVRLTAPDTASEPL >Mature_319_residues MDNLTHSLVGALLGQMGLKKKTGLAMPTLILAANLPDIDAACLFWLEGVQHLGFRRGITHGPIAMLALPIILWALVMSFD RWQERRGKRPVDRLPLHRGWLLALAYIGCLSHPALDWLNNYGIRLLEPFSARWFYGDSLFIIDLWIWIALAVSLWLSFRR ERRGAANWRQPAWTGFMVVSGYIFVNGLITGAAERMASEALAAGGKADALVVASPPPLAFWRRDIFWRTAERYGTARFTP GVGGSVDLTGAPTGMDDPRLAMWVKGDPAARAFLFWARMPVAERDGDALVLRDQRFMHPLAEERFQVRLTAPDTASEPL
Specific function: Unknown
COG id: COG1988
COG function: function code R; Predicted membrane-bound metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35661; Mature: 35661
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLTHSLVGALLGQMGLKKKTGLAMPTLILAANLPDIDAACLFWLEGVQHLGFRRGITH CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC GPIAMLALPIILWALVMSFDRWQERRGKRPVDRLPLHRGWLLALAYIGCLSHPALDWLNN CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHC YGIRLLEPFSARWFYGDSLFIIDLWIWIALAVSLWLSFRRERRGAANWRQPAWTGFMVVS CCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH GYIFVNGLITGAAERMASEALAAGGKADALVVASPPPLAFWRRDIFWRTAERYGTARFTP HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEECC GVGGSVDLTGAPTGMDDPRLAMWVKGDPAARAFLFWARMPVAERDGDALVLRDQRFMHPL CCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHH AEERFQVRLTAPDTASEPL HHCCEEEEEECCCCCCCCC >Mature Secondary Structure MDNLTHSLVGALLGQMGLKKKTGLAMPTLILAANLPDIDAACLFWLEGVQHLGFRRGITH CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC GPIAMLALPIILWALVMSFDRWQERRGKRPVDRLPLHRGWLLALAYIGCLSHPALDWLNN CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHC YGIRLLEPFSARWFYGDSLFIIDLWIWIALAVSLWLSFRRERRGAANWRQPAWTGFMVVS CCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH GYIFVNGLITGAAERMASEALAAGGKADALVVASPPPLAFWRRDIFWRTAERYGTARFTP HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEECC GVGGSVDLTGAPTGMDDPRLAMWVKGDPAARAFLFWARMPVAERDGDALVLRDQRFMHPL CCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHH AEERFQVRLTAPDTASEPL HHCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA