| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486973
Identifier: 103486973
GI number: 103486973
Start: 1552390
End: 1552992
Strand: Reverse
Name: 103486973
Synonym: Sala_1488
Alternate gene names: NA
Gene position: 1552992-1552390 (Counterclockwise)
Preceding gene: 103486974
Following gene: 103486971
Centisome position: 46.42
GC content: 60.03
Gene sequence:
>603_bases ATGACCGATATCACGCGTGACCATGCGCGTTTCCGCTCGATGATCGACGGGACGCAGGAAGACTGGGACATCATCGCGCG CGAGCAGAAAGCCTTTGCGCCGCAGAATGGCAGACGCATTCTCGACCATCTGAAGCTGCTCGGCGGCGATTATGGCGGCT TTCCGGTGGACCGGCTGGAACATTGTCTGCAAACCGCGACGCGCGCGCATCGGGACGGCCGCGACGAGGAATATGTCGTG ATGGCGCTGCTCCACGATATCGGCGACACGCTGGGCGCGTTCAATCACCCCGACGTCGCGGCGGCGATCCTGAAGCCCTT TCTGACCGAGGAAAATCTGTGGATCGTCCAGCACCACGGCATCTTCCAGGGCCATTATTTCTTCCACTATCTCGGGCTCG ACCGCGACATGCGCGACCAGTTCAAGGATAGCCCTTATTACGATGCGTGCGCCGAGTTCTGCGAGAAATATGACGCGCCG GCGTTCGACCCCGATTACGACAGCGAGCCGCTCGAGTTCTTCGAGCCGATGGTGATGCGGATCTGCTCCTATCCGAAAAG CAGCATCTACAAGAAGGTGATGACCGCGGAAGCGGCGGAGTAG
Upstream 100 bases:
>100_bases TGAAATATGGTGTGACCTACGCGCCCGAGTGATGCGCTTTGCATAGCGTTGCAAACCGAAACGAATAACGTAGACTGGCG GCCAACAAGGAGAGGCTGCC
Downstream 100 bases:
>100_bases TTCAGGTAAAGTGCGGCAACAGGAACCTGCTCGCATCGAGCGCATCGAGCGAGGTCGAGATGCCAATCGGCTTTGCGCTT GCCTTCGGGGTGTCTCGACT
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Phosphohydrolase HD Subdomain; Metal-Dependent Phosphohydrolase; HD Domain Protein; Phosphohydrolase; Phosphohydrolase Family Protein; HD Phosphohydrolase-Like Protein; Metal-Dependent Phosphohydrolase HD Subdomain Protein
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTDITRDHARFRSMIDGTQEDWDIIAREQKAFAPQNGRRILDHLKLLGGDYGGFPVDRLEHCLQTATRAHRDGRDEEYVV MALLHDIGDTLGAFNHPDVAAAILKPFLTEENLWIVQHHGIFQGHYFFHYLGLDRDMRDQFKDSPYYDACAEFCEKYDAP AFDPDYDSEPLEFFEPMVMRICSYPKSSIYKKVMTAEAAE
Sequences:
>Translated_200_residues MTDITRDHARFRSMIDGTQEDWDIIAREQKAFAPQNGRRILDHLKLLGGDYGGFPVDRLEHCLQTATRAHRDGRDEEYVV MALLHDIGDTLGAFNHPDVAAAILKPFLTEENLWIVQHHGIFQGHYFFHYLGLDRDMRDQFKDSPYYDACAEFCEKYDAP AFDPDYDSEPLEFFEPMVMRICSYPKSSIYKKVMTAEAAE >Mature_199_residues TDITRDHARFRSMIDGTQEDWDIIAREQKAFAPQNGRRILDHLKLLGGDYGGFPVDRLEHCLQTATRAHRDGRDEEYVVM ALLHDIGDTLGAFNHPDVAAAILKPFLTEENLWIVQHHGIFQGHYFFHYLGLDRDMRDQFKDSPYYDACAEFCEKYDAPA FDPDYDSEPLEFFEPMVMRICSYPKSSIYKKVMTAEAAE
Specific function: Unknown
COG id: COG4341
COG function: function code R; Predicted HD phosphohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23175; Mature: 23044
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDITRDHARFRSMIDGTQEDWDIIAREQKAFAPQNGRRILDHLKLLGGDYGGFPVDRLE CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH HCLQTATRAHRDGRDEEYVVMALLHDIGDTLGAFNHPDVAAAILKPFLTEENLWIVQHHG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECC IFQGHYFFHYLGLDRDMRDQFKDSPYYDACAEFCEKYDAPAFDPDYDSEPLEFFEPMVMR EEEHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH ICSYPKSSIYKKVMTAEAAE HHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TDITRDHARFRSMIDGTQEDWDIIAREQKAFAPQNGRRILDHLKLLGGDYGGFPVDRLE CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHH HCLQTATRAHRDGRDEEYVVMALLHDIGDTLGAFNHPDVAAAILKPFLTEENLWIVQHHG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECC IFQGHYFFHYLGLDRDMRDQFKDSPYYDACAEFCEKYDAPAFDPDYDSEPLEFFEPMVMR EEEHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH ICSYPKSSIYKKVMTAEAAE HHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA