| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486861
Identifier: 103486861
GI number: 103486861
Start: 1430216
End: 1432261
Strand: Reverse
Name: 103486861
Synonym: Sala_1375
Alternate gene names: NA
Gene position: 1432261-1430216 (Counterclockwise)
Preceding gene: 103486862
Following gene: 103486860
Centisome position: 42.82
GC content: 71.07
Gene sequence:
>2046_bases GTGATCCGGCTTTTGGTGGGGGTCGCGGCGCTGGCGCTGCCGGTGGCGGCGATGGCGCAGGACGCCGCCCATGATCTGGA AAAGATCGTGATTGCCGATCTGCGCCTTCCTCCCGGCGTCATCGTCGTCACCGGTTCAGGATCGCTGGCGCCCTCCGATG GCGATGCCGCACAGGGATTCGCGGTGTTGCGCGACCTCGATCGCGGCCTCGGCACGCGCGTCGAAAACCGGCTGCGCGAC GAGGCGGGCATCGTCCAGTTCCGCCGCTCGGACGGGCGCAGCGCGCATCCGACGAGCCAGGGCGTGACGCTGCGCGGGCT CGGCGGCAATGCGTCGAGCCGCGCGCTGGTGACGCTCGACGGCGTGCCGCAGGCCGACCCGTTCGGCGGCTGGGTCGCGT GGAGCGCCTATGACGCGGTCCGGCTCGGCGGGATCGTCGTCACGCGCGGCGGTGGCAGCGGCGCCGATGGGCCCGGCGCG CTCGCGGGGACGATCGGGCTGCATTCGGAGATGACCGACGGCGCCGAAGCGAACCTTGCCCATGGCAGCCGCGATGGCTG GGATGCTTCGGCGAGCGTGGGCGGTGCGGTCGGCAGCGGACAGGTGGCGCTCGACGGGCGCTACAGCCGCGGTGACGGTT TCATCCCCGTCGCCAAGGACCAGCGCGGCAGCGCCGACCGCGCGGCGCCCTATGAGCAGGGCGGAATCGGGATGCGCCTG CGCTTCGATGCGGGCGACAGCAGCCGCATCGAGGCGAGCCTGCGCGGCTTCGTCGACCGCCGCGACCGCGGCGTCGATTT CACCCAGAGCAAGGTCGACGGCATCGACGCCAGCCTGCGCTTCGTCCGCGACCCCGCGGGCGGCGCGCAATGGCTCGCGC TCGCTTATGTCCAACTGCGCGATTTCGAGACGGGTTTTGCGAGCGTCGCGGCGGATCGCAGCAGCGCTGCGCCCGTGCTG TTCCAGCGCGTTCCCGCGACCGGCCTTGGCGCGCGCGTCGAATATCGCCCGGCGGTTGGCGGCGCGAACCCGCTGCGGCT CGGTGCCGACTGGCGCCGCACGACGGGGCGCACCGAGGAGGATTTTTTCTTCGCCGCGGGCGTGCCGCAGCGCCACCGCA GTGCGGGGGGCAGCAGCGACACCGTCGGCGCCTTTGCCGAATGGACGTCGGGCCGCCGCGATGACGACTTCCTCTGGACA CTGAGCGGGCGCGTCGACCGCTGGTGGCTGGGCGGCGGCTATCGCCGCGAGGGCAATATCGGCGGCGCGCCGATCAGCGA CGCCCGTTTTGCAGACCGGCAGGGTTGGGAAGCCAGCGGGCGCGCGGGGGTGCGCTGGAACGGCGACGGCGTGGCGCTGC GCGCGGCGGCCTATAGGGGTTGGCGCCTGCCGACGCTCAACGAGCTGTATCGGCCTTTCCGCGTCGGCGCCGAGGTGACG CTGGCGAATGAGGCGCTGAAGCCTGAACATCTGTGGGGCGGCGAGGTCGGGATCGACTGGGCTTGGGCTGACACCAGCCT GTCGGCAACGCTGTTCGCCAACCGGCTGACCGACGCGATCGCCAATGTGACGCTCGCGCCGAACCTCAACCAGCGGCAGA ATCTCGATGCGATCGACAGCAAGGGCATCGAAGTCAGCGCCGAGCAGGGCATCGGCCCGCTGACGCTACGCGCGACCTGG GCCTATACCGACGCCGATGTGGACGCATCGGGCGCGGCGGCGATGCTCGACGGGCGGCGCCCGGCGCAGATTGCGAAACA TGGCGGCAGCGTGTCGCTGCGAAGCAACGGCGACGGCCCGCTCGGCGGTTTTGCGACCTTGCGCTACATCGGCACGCAGA ATGAGGATGATCTGGGGCTGCTGCGGCTGGACGATGCGCTGACGCTCGCCGCGGGGCTGTCGTGGCGCTTCGCGAACGGG ATCAGCGTCGAGGCGCGCGGCGAAAATCTGTTCGACGAACTGGTCCCTGCGGCGATTTCGGCGGCGGGCATTGTCGAGCG TGCGATGCCGCGGACATTGTGGATCGGGGCGCGTTTCGGTTTCTGA
Upstream 100 bases:
>100_bases AGACGCCGCTGGACGATTATCCGCGGCTGGTGGCGATCGACGCGGCGTGCATGGAGCTGGAAGCCTTCCAGAAGGCGCAT CCCGACGCGGTGAAGCCCGC
Downstream 100 bases:
>100_bases CCTTCACAGCGCCGAAACAGGCGATAGGATGGCTACGACCGGGTAGGACGTTGGGGATTATCAGGCATGGCCGCGAAGAA GCTCAATCTCGACAATTTCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; NB-Dependent Receptor Domain Protein; NB Dependent Receptor; Iron-Regulated Outer Membrane Virulence Protein; NB-Dependent Receptor For Transport Vitamin B; NB-Dependent Receptor-Like Protein
Number of amino acids: Translated: 681; Mature: 681
Protein sequence:
>681_residues MIRLLVGVAALALPVAAMAQDAAHDLEKIVIADLRLPPGVIVVTGSGSLAPSDGDAAQGFAVLRDLDRGLGTRVENRLRD EAGIVQFRRSDGRSAHPTSQGVTLRGLGGNASSRALVTLDGVPQADPFGGWVAWSAYDAVRLGGIVVTRGGGSGADGPGA LAGTIGLHSEMTDGAEANLAHGSRDGWDASASVGGAVGSGQVALDGRYSRGDGFIPVAKDQRGSADRAAPYEQGGIGMRL RFDAGDSSRIEASLRGFVDRRDRGVDFTQSKVDGIDASLRFVRDPAGGAQWLALAYVQLRDFETGFASVAADRSSAAPVL FQRVPATGLGARVEYRPAVGGANPLRLGADWRRTTGRTEEDFFFAAGVPQRHRSAGGSSDTVGAFAEWTSGRRDDDFLWT LSGRVDRWWLGGGYRREGNIGGAPISDARFADRQGWEASGRAGVRWNGDGVALRAAAYRGWRLPTLNELYRPFRVGAEVT LANEALKPEHLWGGEVGIDWAWADTSLSATLFANRLTDAIANVTLAPNLNQRQNLDAIDSKGIEVSAEQGIGPLTLRATW AYTDADVDASGAAAMLDGRRPAQIAKHGGSVSLRSNGDGPLGGFATLRYIGTQNEDDLGLLRLDDALTLAAGLSWRFANG ISVEARGENLFDELVPAAISAAGIVERAMPRTLWIGARFGF
Sequences:
>Translated_681_residues MIRLLVGVAALALPVAAMAQDAAHDLEKIVIADLRLPPGVIVVTGSGSLAPSDGDAAQGFAVLRDLDRGLGTRVENRLRD EAGIVQFRRSDGRSAHPTSQGVTLRGLGGNASSRALVTLDGVPQADPFGGWVAWSAYDAVRLGGIVVTRGGGSGADGPGA LAGTIGLHSEMTDGAEANLAHGSRDGWDASASVGGAVGSGQVALDGRYSRGDGFIPVAKDQRGSADRAAPYEQGGIGMRL RFDAGDSSRIEASLRGFVDRRDRGVDFTQSKVDGIDASLRFVRDPAGGAQWLALAYVQLRDFETGFASVAADRSSAAPVL FQRVPATGLGARVEYRPAVGGANPLRLGADWRRTTGRTEEDFFFAAGVPQRHRSAGGSSDTVGAFAEWTSGRRDDDFLWT LSGRVDRWWLGGGYRREGNIGGAPISDARFADRQGWEASGRAGVRWNGDGVALRAAAYRGWRLPTLNELYRPFRVGAEVT LANEALKPEHLWGGEVGIDWAWADTSLSATLFANRLTDAIANVTLAPNLNQRQNLDAIDSKGIEVSAEQGIGPLTLRATW AYTDADVDASGAAAMLDGRRPAQIAKHGGSVSLRSNGDGPLGGFATLRYIGTQNEDDLGLLRLDDALTLAAGLSWRFANG ISVEARGENLFDELVPAAISAAGIVERAMPRTLWIGARFGF >Mature_681_residues MIRLLVGVAALALPVAAMAQDAAHDLEKIVIADLRLPPGVIVVTGSGSLAPSDGDAAQGFAVLRDLDRGLGTRVENRLRD EAGIVQFRRSDGRSAHPTSQGVTLRGLGGNASSRALVTLDGVPQADPFGGWVAWSAYDAVRLGGIVVTRGGGSGADGPGA LAGTIGLHSEMTDGAEANLAHGSRDGWDASASVGGAVGSGQVALDGRYSRGDGFIPVAKDQRGSADRAAPYEQGGIGMRL RFDAGDSSRIEASLRGFVDRRDRGVDFTQSKVDGIDASLRFVRDPAGGAQWLALAYVQLRDFETGFASVAADRSSAAPVL FQRVPATGLGARVEYRPAVGGANPLRLGADWRRTTGRTEEDFFFAAGVPQRHRSAGGSSDTVGAFAEWTSGRRDDDFLWT LSGRVDRWWLGGGYRREGNIGGAPISDARFADRQGWEASGRAGVRWNGDGVALRAAAYRGWRLPTLNELYRPFRVGAEVT LANEALKPEHLWGGEVGIDWAWADTSLSATLFANRLTDAIANVTLAPNLNQRQNLDAIDSKGIEVSAEQGIGPLTLRATW AYTDADVDASGAAAMLDGRRPAQIAKHGGSVSLRSNGDGPLGGFATLRYIGTQNEDDLGLLRLDDALTLAAGLSWRFANG ISVEARGENLFDELVPAAISAAGIVERAMPRTLWIGARFGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71741; Mature: 71741
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLLVGVAALALPVAAMAQDAAHDLEKIVIADLRLPPGVIVVTGSGSLAPSDGDAAQGF CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCHHHHH AVLRDLDRGLGTRVENRLRDEAGIVQFRRSDGRSAHPTSQGVTLRGLGGNASSRALVTLD HHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEC GVPQADPFGGWVAWSAYDAVRLGGIVVTRGGGSGADGPGALAGTIGLHSEMTDGAEANLA CCCCCCCCCCEEEEEHHCCEEECCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC HGSRDGWDASASVGGAVGSGQVALDGRYSRGDGFIPVAKDQRGSADRAAPYEQGGIGMRL CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEE RFDAGDSSRIEASLRGFVDRRDRGVDFTQSKVDGIDASLRFVRDPAGGAQWLALAYVQLR EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHEEEEHHH DFETGFASVAADRSSAAPVLFQRVPATGLGARVEYRPAVGGANPLRLGADWRRTTGRTEE CCCCCHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCHHHCCCCCCC DFFFAAGVPQRHRSAGGSSDTVGAFAEWTSGRRDDDFLWTLSGRVDRWWLGGGYRREGNI CEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC GGAPISDARFADRQGWEASGRAGVRWNGDGVALRAAAYRGWRLPTLNELYRPFRVGAEVT CCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEE LANEALKPEHLWGGEVGIDWAWADTSLSATLFANRLTDAIANVTLAPNLNQRQNLDAIDS ECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCC KGIEVSAEQGIGPLTLRATWAYTDADVDASGAAAMLDGRRPAQIAKHGGSVSLRSNGDGP CCCEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHCCCEEEEECCCCCC LGGFATLRYIGTQNEDDLGLLRLDDALTLAAGLSWRFANGISVEARGENLFDELVPAAIS CCCEEEEEEECCCCCCCCEEEEECCHHHHHHCCCEEECCCEEEEECCCHHHHHHHHHHHH AAGIVERAMPRTLWIGARFGF HHHHHHHHCCCEEEEEEECCC >Mature Secondary Structure MIRLLVGVAALALPVAAMAQDAAHDLEKIVIADLRLPPGVIVVTGSGSLAPSDGDAAQGF CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCHHHHH AVLRDLDRGLGTRVENRLRDEAGIVQFRRSDGRSAHPTSQGVTLRGLGGNASSRALVTLD HHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEC GVPQADPFGGWVAWSAYDAVRLGGIVVTRGGGSGADGPGALAGTIGLHSEMTDGAEANLA CCCCCCCCCCEEEEEHHCCEEECCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC HGSRDGWDASASVGGAVGSGQVALDGRYSRGDGFIPVAKDQRGSADRAAPYEQGGIGMRL CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEE RFDAGDSSRIEASLRGFVDRRDRGVDFTQSKVDGIDASLRFVRDPAGGAQWLALAYVQLR EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEECCCCCHHHHHEEEEHHH DFETGFASVAADRSSAAPVLFQRVPATGLGARVEYRPAVGGANPLRLGADWRRTTGRTEE CCCCCHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCHHHCCCCCCC DFFFAAGVPQRHRSAGGSSDTVGAFAEWTSGRRDDDFLWTLSGRVDRWWLGGGYRREGNI CEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC GGAPISDARFADRQGWEASGRAGVRWNGDGVALRAAAYRGWRLPTLNELYRPFRVGAEVT CCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEE LANEALKPEHLWGGEVGIDWAWADTSLSATLFANRLTDAIANVTLAPNLNQRQNLDAIDS ECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCC KGIEVSAEQGIGPLTLRATWAYTDADVDASGAAAMLDGRRPAQIAKHGGSVSLRSNGDGP CCCEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHCCCEEEEECCCCCC LGGFATLRYIGTQNEDDLGLLRLDDALTLAAGLSWRFANGISVEARGENLFDELVPAAIS CCCEEEEEEECCCCCCCCEEEEECCHHHHHHCCCEEECCCEEEEECCCHHHHHHHHHHHH AAGIVERAMPRTLWIGARFGF HHHHHHHHCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA