Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486835

Identifier: 103486835

GI number: 103486835

Start: 1408534

End: 1409280

Strand: Reverse

Name: 103486835

Synonym: Sala_1349

Alternate gene names: NA

Gene position: 1409280-1408534 (Counterclockwise)

Preceding gene: 103486838

Following gene: 103486834

Centisome position: 42.13

GC content: 64.26

Gene sequence:

>747_bases
ATGACAAAATTCGACATGGGCGCGGCGTGGGACGACACCTTGCTGCTGCTCAAATCGCATACGGCGCTGATCGTCACGAT
CGCCGGTGTTTTTTTCTTTCTGCCCGCGCTCGCCTTTGCCTGGTTCGGACCCGTGCCGGTCGAGCCGCCCGCGGGCGCCG
ATTTCGATCAGCTGATGACCGCTTTTCGGGAAAGCTTCCGCCAGATGATCCCCGGCCAGATCGTCGTCGCGCTTTGCACG
ATGGTCGGCACGGTGGCGATCCTGCGGTTGTGGCTGGCGCGCACGGGGGTCAGCGTCGGCGAAGCGCTCACCTTTGGCTT
CATGCTTTTTCCGACGATGCTGGCGGTCCAGATATTGTCGGGAATTGCGATCGGCATCGGGGTGATCCTGCTGATCGTCC
CCGGCCTCTATCTCGTCGGGCGGCTGGCGCTCGTCGCGCCGGCGATTGCGGACCGGGCGATCTACAATCCCATCGAGGCG
ATCCGCACGAGCTGGGAACTGACGCGGAACAACGGCTGGGCCATCTTTTTCTTCCTGCTTCTGGTCGGGCTGGTGATCTT
CATCGTCGCGCTGATCGTCGGCGGCGTTCTGTCGGTCGTCGCGGGAAGCGGACCCGGCTTTGGCCGGATGGTTGGCGGCG
TTGTCGAAGCGGCGTTCGGCGCGATCGGCAGCCTGTTCTCGATCGCCGTCGCCGCTGCCGCCTATCGCCAGCTTGCGCTG
CGCAGCGCCTCCGACGTGTTTCAGTGA

Upstream 100 bases:

>100_bases
GTGCAAGGCCCTGCGGAGCATCGCGCGACAGGGCTGGACAGACGCGGCGAACATCGTCACTTTCGTTGCGTCGGGGAAAT
CGAAAAATCACGGGGTATCA

Downstream 100 bases:

>100_bases
GGCGGCCGATCGGAACGGATAAACAAGGCGTATCGCGTCACGTCAAAAAGGCTCTCACCCGCATCCGCGTGAACGAAAGA
CGGTTCGACAACAGGGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTKFDMGAAWDDTLLLLKSHTALIVTIAGVFFFLPALAFAWFGPVPVEPPAGADFDQLMTAFRESFRQMIPGQIVVALCT
MVGTVAILRLWLARTGVSVGEALTFGFMLFPTMLAVQILSGIAIGIGVILLIVPGLYLVGRLALVAPAIADRAIYNPIEA
IRTSWELTRNNGWAIFFFLLLVGLVIFIVALIVGGVLSVVAGSGPGFGRMVGGVVEAAFGAIGSLFSIAVAAAAYRQLAL
RSASDVFQ

Sequences:

>Translated_248_residues
MTKFDMGAAWDDTLLLLKSHTALIVTIAGVFFFLPALAFAWFGPVPVEPPAGADFDQLMTAFRESFRQMIPGQIVVALCT
MVGTVAILRLWLARTGVSVGEALTFGFMLFPTMLAVQILSGIAIGIGVILLIVPGLYLVGRLALVAPAIADRAIYNPIEA
IRTSWELTRNNGWAIFFFLLLVGLVIFIVALIVGGVLSVVAGSGPGFGRMVGGVVEAAFGAIGSLFSIAVAAAAYRQLAL
RSASDVFQ
>Mature_247_residues
TKFDMGAAWDDTLLLLKSHTALIVTIAGVFFFLPALAFAWFGPVPVEPPAGADFDQLMTAFRESFRQMIPGQIVVALCTM
VGTVAILRLWLARTGVSVGEALTFGFMLFPTMLAVQILSGIAIGIGVILLIVPGLYLVGRLALVAPAIADRAIYNPIEAI
RTSWELTRNNGWAIFFFLLLVGLVIFIVALIVGGVLSVVAGSGPGFGRMVGGVVEAAFGAIGSLFSIAVAAAAYRQLALR
SASDVFQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26223; Mature: 26091

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKFDMGAAWDDTLLLLKSHTALIVTIAGVFFFLPALAFAWFGPVPVEPPAGADFDQLMT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AFRESFRQMIPGQIVVALCTMVGTVAILRLWLARTGVSVGEALTFGFMLFPTMLAVQILS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GIAIGIGVILLIVPGLYLVGRLALVAPAIADRAIYNPIEAIRTSWELTRNNGWAIFFFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LVGLVIFIVALIVGGVLSVVAGSGPGFGRMVGGVVEAAFGAIGSLFSIAVAAAAYRQLAL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSASDVFQ
HHHHHHCC
>Mature Secondary Structure 
TKFDMGAAWDDTLLLLKSHTALIVTIAGVFFFLPALAFAWFGPVPVEPPAGADFDQLMT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
AFRESFRQMIPGQIVVALCTMVGTVAILRLWLARTGVSVGEALTFGFMLFPTMLAVQILS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GIAIGIGVILLIVPGLYLVGRLALVAPAIADRAIYNPIEAIRTSWELTRNNGWAIFFFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LVGLVIFIVALIVGGVLSVVAGSGPGFGRMVGGVVEAAFGAIGSLFSIAVAAAAYRQLAL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSASDVFQ
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA