| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is pgk
Identifier: 103486804
GI number: 103486804
Start: 1375616
End: 1376812
Strand: Reverse
Name: pgk
Synonym: Sala_1318
Alternate gene names: 103486804
Gene position: 1376812-1375616 (Counterclockwise)
Preceding gene: 103486805
Following gene: 103486803
Centisome position: 41.16
GC content: 66.83
Gene sequence:
>1197_bases ATGACCGCGTTCAAGACCCTCGACGATATCGGTGACGTCACCGGCAAGCGCGTCCTCGTGCGCGTCGATCTCAACGTCCC GATGATCGATGGCGCGGTCAGCGACGCGACGCGCATCCAGGCGGCGATGCCGACGATCCGCGAATTGTCGGACAAGGGCG CGATTGTTCTGCTGCTCGCGCATTTCGGGCGGCCGAAGGGGGCGAAGAACCCGACGCAGTCATTGAGCCTCGTCATGGGC GGCGTCGAGGATGTGCTGGGCCATTCGGTGATGTTCATTCCCGAAGCGGTCGGCGAGGGCGCGAAGGCGGGCGTTGCCGT GCTCGCGCCGGGCGATGTCGCGGTGCTCGAGAACACGCGCTTCTATCCCGGCGAGGAGCAGAACGACCCGGCCTTTGCCG ATGCGCTCGCTGAAATCGGCGACCTGTATGTCAATGACGCCTTTTCGGCCGCGCACCGCGCGCATGGCTCGACCGAAGGC ATCGCCCGGCGGCTTCCGGCCTATGCAGGGCGTGCGATGGAGGCCGAGCTGAAGGCGCTTGACGCCGCGCTCGGCAATCC GGTGCAGCCGGTCGCGGCGGTCGTCGGCGGCGCCAAGGTGTCGAGCAAGATCGATGTGCTGAGGAACCTCGTCGGAAAGG TCGATCACCTCATCATCGGCGGAGGCATGGCGAACACCTTTCTTGCCGCGCGCGGCGTCGACGTCGGCAGGTCGCTGTGC GAGCATGAGCTGGTCGATACCGCCAATGCGATTTTCGACGCCGCCGACGCCGCGGGCTGCACCATCCATCTGCCCTATGA CGTCGTGGTGGCAAAAGAGTTTGCGCCGAACCCGCCGACGCGCACCGTCAACGTCCATGAGGTCGCCGCCGACGAGATGA TCCTCGACGTCGGGCCCGCCGCGATCGAAGCCCTCGCGGACGTACTCAAAAACTGTCGCACGCTGGTGTGGAACGGTCCG CTCGGCGCGTTCGAGACGCCACCCTTCGACACCGCGACCGTTGCGCTGGCCAGGACCGCTGCCGCGTTGACGCGCGAGGG ATCGCTCACCTCGGTCGCGGGCGGTGGCGATACCGTCGCGGCGCTCAATCATGCGGGGGTGGCCGGCGACTTCACCTTTG TTTCGACCGCCGGCGGAGCCTTCCTCGAATGGATGGAAGGCAAGCCGCTGCCGGGCGTGGACGCCCTCAAAGCCTGA
Upstream 100 bases:
>100_bases CGACGCTATCAGATGGCGGGATGGTGGCGGGTGACGAAAGCGCAGGAGATGGGCCCCCGCCTTCGCGGGGGCACAGCGTC GGGCAATGGAGTATAAACGG
Downstream 100 bases:
>100_bases GTTTATCGCGCAATTGCATCCCGCGCGGCGGGACGCTATGCGCGCGGCCACATACGTATGCAATCAGTCGGAGACCTTAT GACCACCGCCAATGCCGAGA
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MTAFKTLDDIGDVTGKRVLVRVDLNVPMIDGAVSDATRIQAAMPTIRELSDKGAIVLLLAHFGRPKGAKNPTQSLSLVMG GVEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTRFYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEG IARRLPAYAGRAMEAELKALDAALGNPVQPVAAVVGGAKVSSKIDVLRNLVGKVDHLIIGGGMANTFLAARGVDVGRSLC EHELVDTANAIFDAADAAGCTIHLPYDVVVAKEFAPNPPTRTVNVHEVAADEMILDVGPAAIEALADVLKNCRTLVWNGP LGAFETPPFDTATVALARTAAALTREGSLTSVAGGGDTVAALNHAGVAGDFTFVSTAGGAFLEWMEGKPLPGVDALKA
Sequences:
>Translated_398_residues MTAFKTLDDIGDVTGKRVLVRVDLNVPMIDGAVSDATRIQAAMPTIRELSDKGAIVLLLAHFGRPKGAKNPTQSLSLVMG GVEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTRFYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEG IARRLPAYAGRAMEAELKALDAALGNPVQPVAAVVGGAKVSSKIDVLRNLVGKVDHLIIGGGMANTFLAARGVDVGRSLC EHELVDTANAIFDAADAAGCTIHLPYDVVVAKEFAPNPPTRTVNVHEVAADEMILDVGPAAIEALADVLKNCRTLVWNGP LGAFETPPFDTATVALARTAAALTREGSLTSVAGGGDTVAALNHAGVAGDFTFVSTAGGAFLEWMEGKPLPGVDALKA >Mature_397_residues TAFKTLDDIGDVTGKRVLVRVDLNVPMIDGAVSDATRIQAAMPTIRELSDKGAIVLLLAHFGRPKGAKNPTQSLSLVMGG VEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTRFYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEGI ARRLPAYAGRAMEAELKALDAALGNPVQPVAAVVGGAKVSSKIDVLRNLVGKVDHLIIGGGMANTFLAARGVDVGRSLCE HELVDTANAIFDAADAAGCTIHLPYDVVVAKEFAPNPPTRTVNVHEVAADEMILDVGPAAIEALADVLKNCRTLVWNGPL GAFETPPFDTATVALARTAAALTREGSLTSVAGGGDTVAALNHAGVAGDFTFVSTAGGAFLEWMEGKPLPGVDALKA
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family
Homologues:
Organism=Homo sapiens, GI31543397, Length=411, Percent_Identity=40.8759124087591, Blast_Score=261, Evalue=6e-70, Organism=Homo sapiens, GI4505763, Length=411, Percent_Identity=40.1459854014599, Blast_Score=258, Evalue=7e-69, Organism=Escherichia coli, GI1789294, Length=388, Percent_Identity=44.5876288659794, Blast_Score=301, Evalue=4e-83, Organism=Caenorhabditis elegans, GI17508823, Length=403, Percent_Identity=42.1836228287841, Blast_Score=291, Evalue=3e-79, Organism=Saccharomyces cerevisiae, GI6319857, Length=400, Percent_Identity=38.25, Blast_Score=243, Evalue=4e-65, Organism=Drosophila melanogaster, GI17136394, Length=405, Percent_Identity=40.4938271604938, Blast_Score=262, Evalue=3e-70, Organism=Drosophila melanogaster, GI24581203, Length=404, Percent_Identity=39.1089108910891, Blast_Score=246, Evalue=2e-65,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): PGK_SPHAL (Q1GTJ0)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616365.1 - ProteinModelPortal: Q1GTJ0 - SMR: Q1GTJ0 - GeneID: 4082242 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1318 - NMPDR: fig|317655.9.peg.1253 - HOGENOM: HBG453500 - OMA: DCIGDEV - ProtClustDB: PRK00073 - BioCyc: SALA317655:SALA_1318-MONOMER - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_00145 - InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 - Gene3D: G3DSA:3.40.50.1270 - Gene3D: G3DSA:3.40.50.1260 - PANTHER: PTHR11406 - PIRSF: PIRSF000724 - PRINTS: PR00477
Pfam domain/function: PF00162 PGK; SSF53748 PGK
EC number: =2.7.2.3
Molecular weight: Translated: 40996; Mature: 40865
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: BINDING 38-38 BINDING 120-120 BINDING 153-153 BINDING 203-203 BINDING 325-325
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFKTLDDIGDVTGKRVLVRVDLNVPMIDGAVSDATRIQAAMPTIRELSDKGAIVLLLA CCCHHHHHHHHCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE HFGRPKGAKNPTQSLSLVMGGVEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTR CCCCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEHHHCCCCCCCEEEECCCCEEEEECCC FYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEGIARRLPAYAGRAMEAELKAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH DAALGNPVQPVAAVVGGAKVSSKIDVLRNLVGKVDHLIIGGGMANTFLAARGVDVGRSLC HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHH EHELVDTANAIFDAADAAGCTIHLPYDVVVAKEFAPNPPTRTVNVHEVAADEMILDVGPA HHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCCCCCCEEEHHHHHHHHHEEECCHH AIEALADVLKNCRTLVWNGPLGAFETPPFDTATVALARTAAALTREGSLTSVAGGGDTVA HHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEE ALNHAGVAGDFTFVSTAGGAFLEWMEGKPLPGVDALKA EHHCCCCCCCEEEEECCCCHHHHHHCCCCCCCCHHHCC >Mature Secondary Structure TAFKTLDDIGDVTGKRVLVRVDLNVPMIDGAVSDATRIQAAMPTIRELSDKGAIVLLLA CCHHHHHHHHCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE HFGRPKGAKNPTQSLSLVMGGVEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTR CCCCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEHHHCCCCCCCEEEECCCCEEEEECCC FYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEGIARRLPAYAGRAMEAELKAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH DAALGNPVQPVAAVVGGAKVSSKIDVLRNLVGKVDHLIIGGGMANTFLAARGVDVGRSLC HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHH EHELVDTANAIFDAADAAGCTIHLPYDVVVAKEFAPNPPTRTVNVHEVAADEMILDVGPA HHHHHHHHHHHHHCCCCCCCEEECCCEEEEECCCCCCCCCCEEEHHHHHHHHHEEECCHH AIEALADVLKNCRTLVWNGPLGAFETPPFDTATVALARTAAALTREGSLTSVAGGGDTVA HHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEE ALNHAGVAGDFTFVSTAGGAFLEWMEGKPLPGVDALKA EHHCCCCCCCEEEEECCCCHHHHHHCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA