| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is pleC [H]
Identifier: 103486656
GI number: 103486656
Start: 1202163
End: 1203533
Strand: Direct
Name: pleC [H]
Synonym: Sala_1168
Alternate gene names: 103486656
Gene position: 1202163-1203533 (Clockwise)
Preceding gene: 103486655
Following gene: 103486661
Centisome position: 35.94
GC content: 70.39
Gene sequence:
>1371_bases ATGAGCGAGCGCGTCGTCCGCGGCCGCGTTGACCGGTCGGGCGTACTGGTGAGCGCCGATGTGCCGCTGTTGCGGCTTCA GCAACGCGCGGGGGCGGGGCTTGGCAGGCCGCTCGCGCTGCCGCACCTCGCGCGGCTCGTCGCACTGTCGCAGCGGCTGC ACCGCGAGATCAGTCGTCCGCTCCACGCCGCCGACGACCATAGCGACATCCACGCGCTCGTGCGCATCACGCCCGACGAC GAGGGCGCGAGCCTCGAAATCAGCGACTGGCGCGCGCGCGCTGTGACGCCGCCCGGCATACCGCCCGTCACCGACGAGAC CCCGATGGCCGACGGATGGGCGTGGGAGTGTGACCAGCAGCTACGGCTCGTGGCGCTCCGCGCTGCGGGGAAGGCGCCTG CGGTGCCGCCTGGATGGGAAGGGCGCTCGCTGTCTGAATTGTTCGAGTTGCAGCCCGACGCCGATGGCCGCTTTCCGGTG TTGCGCGCGCTCGCGCGGCAGTCGCGCTTTGAAGGGCAGCGCGTGCAGGCTGCGGGCGCGGCGATGACGCTTGGCGGTGA CGCGCTGTTCGATGCGGCGGGTCGCTTCACGGGCTTTCGCGGCTTCGCCTCGATTGTCGACGGGCCGCCCGCCACGGCGC CGAAGGGCGGCGGGGCACCGGTCGATCCTGCCTTTGGTTCGCTGCCGCTGTCCGACCCGCAGTTCGGCCGCCGCATCGAC GGCGCGCTGCGCGGCCCACTCAGCCGCATCATCGCGACCGCGGAGACGATTTCGGGGCAGTTCGACGGGCCGATCCGCGC CGATTACGCGCGCTATGCCGGCGACATTGCCCATGCCGGGCGGCATCTGCTGGGCCTTGTCGACGACCTTGCCGACCTTC AGAATATCGAACGGCCGGGGTTCAAGGCGGCGCGCGACGACATCGACCTCGGCGACCTGGCGCGCCGCGCGGTCGGTCTG CTCGGCATGAAGGCCGAGGAGAAGGGGATTCGCATTTCGGCGCCCAGCACCGACGACCGGATGCCCGCAACGGGCGAGTT TCGCCGCGTGTTGCAGGTGCTGCTCAACCTGCTGGGCAATGCGATCCGCTATTCGCCCGAGGATTCGCAGATATGGATCC GCGTCGATCGCGAGGGCGACCGTGCGATGGTCACCGTCGCCGATCAGGGGCAGGGAATCGACGCGGAGCAGCAGGCGATG GTGTTCGAAAAGTTCGAGCGGCTCGGACGCACCGACAGCGGCGGATCGGGCCTCGGACTCTATATCGCCCGCCGCCTTGC GCGCGCGATGGACGGCGACCTGACCGTCGACAGCGCACCGGGTCAGGGCGCGCGTTTCACGTTGAGCCTGCCGGCGCGGG ATGAGGAGTAA
Upstream 100 bases:
>100_bases TCGACCGTGAAGCGCTGGCCCCGCTCGAAGCGTCGCTGGCAATGCTCACCGCGCGCGCGGTGAGCGACGCCGATGGCGTC ACGGCGGCGGAGACGGGGCG
Downstream 100 bases:
>100_bases GGAGCAGGCGTTGGGCGGAGATCAGGTCGCCCGGCTATTTCGTCATGCTGAACTCGTTTCAGCATCCATGACCGGACCTC TGGTCGGTTGCGGCGTCGAA
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSERVVRGRVDRSGVLVSADVPLLRLQQRAGAGLGRPLALPHLARLVALSQRLHREISRPLHAADDHSDIHALVRITPDD EGASLEISDWRARAVTPPGIPPVTDETPMADGWAWECDQQLRLVALRAAGKAPAVPPGWEGRSLSELFELQPDADGRFPV LRALARQSRFEGQRVQAAGAAMTLGGDALFDAAGRFTGFRGFASIVDGPPATAPKGGGAPVDPAFGSLPLSDPQFGRRID GALRGPLSRIIATAETISGQFDGPIRADYARYAGDIAHAGRHLLGLVDDLADLQNIERPGFKAARDDIDLGDLARRAVGL LGMKAEEKGIRISAPSTDDRMPATGEFRRVLQVLLNLLGNAIRYSPEDSQIWIRVDREGDRAMVTVADQGQGIDAEQQAM VFEKFERLGRTDSGGSGLGLYIARRLARAMDGDLTVDSAPGQGARFTLSLPARDEE
Sequences:
>Translated_456_residues MSERVVRGRVDRSGVLVSADVPLLRLQQRAGAGLGRPLALPHLARLVALSQRLHREISRPLHAADDHSDIHALVRITPDD EGASLEISDWRARAVTPPGIPPVTDETPMADGWAWECDQQLRLVALRAAGKAPAVPPGWEGRSLSELFELQPDADGRFPV LRALARQSRFEGQRVQAAGAAMTLGGDALFDAAGRFTGFRGFASIVDGPPATAPKGGGAPVDPAFGSLPLSDPQFGRRID GALRGPLSRIIATAETISGQFDGPIRADYARYAGDIAHAGRHLLGLVDDLADLQNIERPGFKAARDDIDLGDLARRAVGL LGMKAEEKGIRISAPSTDDRMPATGEFRRVLQVLLNLLGNAIRYSPEDSQIWIRVDREGDRAMVTVADQGQGIDAEQQAM VFEKFERLGRTDSGGSGLGLYIARRLARAMDGDLTVDSAPGQGARFTLSLPARDEE >Mature_455_residues SERVVRGRVDRSGVLVSADVPLLRLQQRAGAGLGRPLALPHLARLVALSQRLHREISRPLHAADDHSDIHALVRITPDDE GASLEISDWRARAVTPPGIPPVTDETPMADGWAWECDQQLRLVALRAAGKAPAVPPGWEGRSLSELFELQPDADGRFPVL RALARQSRFEGQRVQAAGAAMTLGGDALFDAAGRFTGFRGFASIVDGPPATAPKGGGAPVDPAFGSLPLSDPQFGRRIDG ALRGPLSRIIATAETISGQFDGPIRADYARYAGDIAHAGRHLLGLVDDLADLQNIERPGFKAARDDIDLGDLARRAVGLL GMKAEEKGIRISAPSTDDRMPATGEFRRVLQVLLNLLGNAIRYSPEDSQIWIRVDREGDRAMVTVADQGQGIDAEQQAMV FEKFERLGRTDSGGSGLGLYIARRLARAMDGDLTVDSAPGQGARFTLSLPARDEE
Specific function: Member of the two-component regulatory system involved in the regulation of polar organelle development. PleC functions as a membrane-associated protein kinase that transfers phosphate to the response regulator pleD, leading to its activation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788713, Length=228, Percent_Identity=30.2631578947368, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI87081816, Length=215, Percent_Identity=33.953488372093, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI48994928, Length=227, Percent_Identity=28.1938325991189, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI87082128, Length=225, Percent_Identity=29.3333333333333, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI145693157, Length=225, Percent_Identity=28, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786912, Length=214, Percent_Identity=30.3738317757009, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786600, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789149, Length=227, Percent_Identity=27.7533039647577, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788549, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790436, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1788393, Length=216, Percent_Identity=28.7037037037037, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1787894, Length=170, Percent_Identity=31.1764705882353, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1790861, Length=221, Percent_Identity=28.0542986425339, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786783, Length=222, Percent_Identity=25.2252252252252, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 48945; Mature: 48814
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERVVRGRVDRSGVLVSADVPLLRLQQRAGAGLGRPLALPHLARLVALSQRLHREISRP CCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC LHAADDHSDIHALVRITPDDEGASLEISDWRARAVTPPGIPPVTDETPMADGWAWECDQQ CCCCCCCCCEEEEEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHH LRLVALRAAGKAPAVPPGWEGRSLSELFELQPDADGRFPVLRALARQSRFEGQRVQAAGA HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCC AMTLGGDALFDAAGRFTGFRGFASIVDGPPATAPKGGGAPVDPAFGSLPLSDPQFGRRID EEEECCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GALRGPLSRIIATAETISGQFDGPIRADYARYAGDIAHAGRHLLGLVDDLADLQNIERPG HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FKAARDDIDLGDLARRAVGLLGMKAEEKGIRISAPSTDDRMPATGEFRRVLQVLLNLLGN CCHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH AIRYSPEDSQIWIRVDREGDRAMVTVADQGQGIDAEQQAMVFEKFERLGRTDSGGSGLGL HHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH YIARRLARAMDGDLTVDSAPGQGARFTLSLPARDEE HHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCC >Mature Secondary Structure SERVVRGRVDRSGVLVSADVPLLRLQQRAGAGLGRPLALPHLARLVALSQRLHREISRP CCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC LHAADDHSDIHALVRITPDDEGASLEISDWRARAVTPPGIPPVTDETPMADGWAWECDQQ CCCCCCCCCEEEEEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHH LRLVALRAAGKAPAVPPGWEGRSLSELFELQPDADGRFPVLRALARQSRFEGQRVQAAGA HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCC AMTLGGDALFDAAGRFTGFRGFASIVDGPPATAPKGGGAPVDPAFGSLPLSDPQFGRRID EEEECCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GALRGPLSRIIATAETISGQFDGPIRADYARYAGDIAHAGRHLLGLVDDLADLQNIERPG HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FKAARDDIDLGDLARRAVGLLGMKAEEKGIRISAPSTDDRMPATGEFRRVLQVLLNLLGN CCHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH AIRYSPEDSQIWIRVDREGDRAMVTVADQGQGIDAEQQAMVFEKFERLGRTDSGGSGLGL HHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH YIARRLARAMDGDLTVDSAPGQGARFTLSLPARDEE HHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8421698; 11259647 [H]