Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486625

Identifier: 103486625

GI number: 103486625

Start: 1174645

End: 1175316

Strand: Direct

Name: 103486625

Synonym: Sala_1137

Alternate gene names: NA

Gene position: 1174645-1175316 (Clockwise)

Preceding gene: 103486621

Following gene: 103486626

Centisome position: 35.11

GC content: 66.82

Gene sequence:

>672_bases
ATGATCGCGATTTCGCTTCCGTCCCGCAAAACAATGATCCTGACGTGCGGCGCGGCGGCCATGGCGACGGTCGCGGGCTG
CGCCAGGGACAATGAAATCGAACTGGCGGGAGGCGTCGGCATCACTGCGACGCGGACCGCCTGTCCGGCGGTCGCGGTGC
CATTGCACACCGGCGACATCACATTGTTCGACCCCCAGACGAGCCGCGATGCGCGCGCGATCGACGTTGTCGCGACAATC
ACCAACGTGACGTCGCAGTGCAATGATAGCGGCGACAAAGTCTATCAGCTCGCAAACTTCGACGTGGTGGCCACGCGCCG
CGACGCCGGCCCGGCGCGCACGGTGACCCTGCCCTATTATGCGACGGTGCTGCAGGGCGGTACCGCGGTCGTCGCCAAGC
GGCTCGGCAATGTCGCGGTGACCTTTGCCGAGGGCCAGACTCGCGGCACCGGCCGCGCGCAGGCGTCGGCCTATGTCGAT
CGCGCCGCGGCGACCTTGCCCGCCGACATTCAGGAACGCATCACGCGCAAGCGCAGGCCGGGCGATCAGGATGCGGCGAT
CGACCCGCTCAGCCTGCCCGAAGTCCGCGCGGCGGTGCAACGCGCGAGCTTCGAGTTGCTCGTCGGCTTTCAGCTGACGC
AGGAGCAGCTTGAGTATAACGTCCGACGATAA

Upstream 100 bases:

>100_bases
TCGGTTGCGCCTTGTTCATCGCACCGATAAGAAGCGGCGCGCATGAAGCGGGATCAATCGTCCCGAAACCTGTTTGCGCG
CCTGTTTGGAAAGTCTTGTC

Downstream 100 bases:

>100_bases
TCATGCGGCGGCGCCCGGGGCGTCGCTCGCACCACGCGCCCCGCTCCGCCGACTGGCGATGCGGGGCTTTTCGCGCCCGA
ATAGCTGTTATAGGGCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MIAISLPSRKTMILTCGAAAMATVAGCARDNEIELAGGVGITATRTACPAVAVPLHTGDITLFDPQTSRDARAIDVVATI
TNVTSQCNDSGDKVYQLANFDVVATRRDAGPARTVTLPYYATVLQGGTAVVAKRLGNVAVTFAEGQTRGTGRAQASAYVD
RAAATLPADIQERITRKRRPGDQDAAIDPLSLPEVRAAVQRASFELLVGFQLTQEQLEYNVRR

Sequences:

>Translated_223_residues
MIAISLPSRKTMILTCGAAAMATVAGCARDNEIELAGGVGITATRTACPAVAVPLHTGDITLFDPQTSRDARAIDVVATI
TNVTSQCNDSGDKVYQLANFDVVATRRDAGPARTVTLPYYATVLQGGTAVVAKRLGNVAVTFAEGQTRGTGRAQASAYVD
RAAATLPADIQERITRKRRPGDQDAAIDPLSLPEVRAAVQRASFELLVGFQLTQEQLEYNVRR
>Mature_223_residues
MIAISLPSRKTMILTCGAAAMATVAGCARDNEIELAGGVGITATRTACPAVAVPLHTGDITLFDPQTSRDARAIDVVATI
TNVTSQCNDSGDKVYQLANFDVVATRRDAGPARTVTLPYYATVLQGGTAVVAKRLGNVAVTFAEGQTRGTGRAQASAYVD
RAAATLPADIQERITRKRRPGDQDAAIDPLSLPEVRAAVQRASFELLVGFQLTQEQLEYNVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23618; Mature: 23618

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAISLPSRKTMILTCGAAAMATVAGCARDNEIELAGGVGITATRTACPAVAVPLHTGDI
CEEEECCCCCEEEEEECHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCEEEEEEECCCE
TLFDPQTSRDARAIDVVATITNVTSQCNDSGDKVYQLANFDVVATRRDAGPARTVTLPYY
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCEEEEHHHH
ATVLQGGTAVVAKRLGNVAVTFAEGQTRGTGRAQASAYVDRAAATLPADIQERITRKRRP
HHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
GDQDAAIDPLSLPEVRAAVQRASFELLVGFQLTQEQLEYNVRR
CCCCCCCCCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAISLPSRKTMILTCGAAAMATVAGCARDNEIELAGGVGITATRTACPAVAVPLHTGDI
CEEEECCCCCEEEEEECHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCEEEEEEECCCE
TLFDPQTSRDARAIDVVATITNVTSQCNDSGDKVYQLANFDVVATRRDAGPARTVTLPYY
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCEEEEHHHH
ATVLQGGTAVVAKRLGNVAVTFAEGQTRGTGRAQASAYVDRAAATLPADIQERITRKRRP
HHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
GDQDAAIDPLSLPEVRAAVQRASFELLVGFQLTQEQLEYNVRR
CCCCCCCCCCCCHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA