| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486583
Identifier: 103486583
GI number: 103486583
Start: 1122753
End: 1123445
Strand: Reverse
Name: 103486583
Synonym: Sala_1094
Alternate gene names: NA
Gene position: 1123445-1122753 (Counterclockwise)
Preceding gene: 103486585
Following gene: 103486582
Centisome position: 33.58
GC content: 70.13
Gene sequence:
>693_bases ATGTCATGGACCGATGAGCGCATCGAGCAATTGCGCAGCATGTGGGAAAAGGGCCTGACCGCCAGCCAGATCGCCGACGA ACTCGGCGGGGTCAGCCGCAATGCCGTGATCGGCAAGGCGCACCGGCTGGGCCTGAAATCGCGCCCCTCGCCCGTCAAGG CGACCGAGAAGATGGCAAAGCCCGCGAAAACGGCAGCCCCCACTGCGGCGAAACCTGCGCCCGCCGCGACGGCGGCGCGA CCCACCGCACCCGCCACGCCGCGCCCGGCATCGACTGTTCCGCGTCCCGAACCCAAGCCTGCGGCCGAGGCTCCGCACAT CGAGAATGCCGCCGCCGCGCCGACGAAACCGGAAGCGCCGCGGATCGTGTCGATCGGCCCCGGCGGCTTTATCCGTCAAG GCCCCGGCGATCAGCAGGCGCCGATCCCGCCCGCACCGCCGCGTCGGCTGGTGCCCGCCAAGCCGAGCCCGGAAATCGCC GACAAGACGAGCCTGCTCGACCTCAACGACCGTATCTGCCGCTGGCCGATGGGGCATCCGGGCGAGCCCGATTTCCACTT CTGCGGCGAAGCGGTGAACCCCGGCTTTCCCTATTGTGTCGAACATTGCGGCCGCGCCTATCAGGCGCAATTGCCGCGCG GCACGCGCCGTCCGCCCCCGCCCCCGCCCTTCGGTGGTCCCCGGGTTCGTTAA
Upstream 100 bases:
>100_bases TCCCCGATCTTACCGCAAGCTGGGCCGTCGCGACAACGATCCCGAAAGGATCGCAAGGCACACGCTATGGCCCGTGGCGG GAAATGATGAGGAACAGAAT
Downstream 100 bases:
>100_bases AGGCGTCCGGTGAGGCCGTTCGGCCAGGATTTCGAATTCGCCCGCGCGCTCGGCCTGCAAATGATCGAGCGCCGCGACGG GCGTTGCACGATGGCCATCG
Product: GcrA cell cycle regulator
Products: NA
Alternate protein names: Global Cell Cycle Regulator GcrA; GcrA Cell Cycle Regulator Superfamily; Cell Cycle Regulator GcrA; Gcra Cell Cycle Regulator
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MSWTDERIEQLRSMWEKGLTASQIADELGGVSRNAVIGKAHRLGLKSRPSPVKATEKMAKPAKTAAPTAAKPAPAATAAR PTAPATPRPASTVPRPEPKPAAEAPHIENAAAAPTKPEAPRIVSIGPGGFIRQGPGDQQAPIPPAPPRRLVPAKPSPEIA DKTSLLDLNDRICRWPMGHPGEPDFHFCGEAVNPGFPYCVEHCGRAYQAQLPRGTRRPPPPPPFGGPRVR
Sequences:
>Translated_230_residues MSWTDERIEQLRSMWEKGLTASQIADELGGVSRNAVIGKAHRLGLKSRPSPVKATEKMAKPAKTAAPTAAKPAPAATAAR PTAPATPRPASTVPRPEPKPAAEAPHIENAAAAPTKPEAPRIVSIGPGGFIRQGPGDQQAPIPPAPPRRLVPAKPSPEIA DKTSLLDLNDRICRWPMGHPGEPDFHFCGEAVNPGFPYCVEHCGRAYQAQLPRGTRRPPPPPPFGGPRVR >Mature_229_residues SWTDERIEQLRSMWEKGLTASQIADELGGVSRNAVIGKAHRLGLKSRPSPVKATEKMAKPAKTAAPTAAKPAPAATAARP TAPATPRPASTVPRPEPKPAAEAPHIENAAAAPTKPEAPRIVSIGPGGFIRQGPGDQQAPIPPAPPRRLVPAKPSPEIAD KTSLLDLNDRICRWPMGHPGEPDFHFCGEAVNPGFPYCVEHCGRAYQAQLPRGTRRPPPPPPFGGPRVR
Specific function: Unknown
COG id: COG5352
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24426; Mature: 24295
Theoretical pI: Translated: 10.68; Mature: 10.68
Prosite motif: PS00527 RIBOSOMAL_S14
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWTDERIEQLRSMWEKGLTASQIADELGGVSRNAVIGKAHRLGLKSRPSPVKATEKMAK CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHC PAKTAAPTAAKPAPAATAARPTAPATPRPASTVPRPEPKPAAEAPHIENAAAAPTKPEAP CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RIVSIGPGGFIRQGPGDQQAPIPPAPPRRLVPAKPSPEIADKTSLLDLNDRICRWPMGHP EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCHHHHCCCCCCC GEPDFHFCGEAVNPGFPYCVEHCGRAYQAQLPRGTRRPPPPPPFGGPRVR CCCCHHHCCCCCCCCCHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SWTDERIEQLRSMWEKGLTASQIADELGGVSRNAVIGKAHRLGLKSRPSPVKATEKMAK CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHC PAKTAAPTAAKPAPAATAARPTAPATPRPASTVPRPEPKPAAEAPHIENAAAAPTKPEAP CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RIVSIGPGGFIRQGPGDQQAPIPPAPPRRLVPAKPSPEIADKTSLLDLNDRICRWPMGHP EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCHHHHCCCCCCC GEPDFHFCGEAVNPGFPYCVEHCGRAYQAQLPRGTRRPPPPPPFGGPRVR CCCCHHHCCCCCCCCCHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA