Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 103486538

GI number: 103486538

Start: 1082741

End: 1084165

Strand: Reverse

Name: glcD [H]

Synonym: Sala_1049

Alternate gene names: 103486538

Gene position: 1084165-1082741 (Counterclockwise)

Preceding gene: 103486541

Following gene: 103486537

Centisome position: 32.41

GC content: 70.18

Gene sequence:

>1425_bases
ATGCCACGCCGCCCTTCCCCCTCGCTGCTCCGGGCGCTTTCCGATCTCCTCGGCGTCAAGGGATTCAGCACCGACGCCGA
CGCGATGGCGCCATGGCTCACCGACTGGCGCGGCAAATATCATGGCCGCGCCGCGGCGATGCTGTCGCCCGCCAGCACCG
AAGAGGTCGCCGCCGTGGTGCGCCTGTGCGCCGAGGCGGACGCCGCGCTGGTGCCGCAGGGCGGCAACAGCGGCATGGTC
GGCGGCGCGACTCCCGATGCCAGCGGCGATCAACTGCTGCTCAGCCTCCGCCGCATGAACCGCGTCCGTCATATCGACGT
CGCCGCGGGGATCGCCATCGCCGAGGCGGGCGTGATCCTCCAGTCCTTCCACGACGCCGTGCTGACACATGGGCTGCGCT
TTCCGCTGACGCTCGGCGGCAAGGGATCGGCGACGATCGGCGGACTCGTTTCGACCAACGCGGGAGGAACACAGGTGCTG
CGCCACGGCACGATGCGCGCGCTCGTCGCGGGGATCGAGGCGGTGCTGCCCGATGGCAGCATATTCGACGGCCTCGCTCC
GCTGAAGAAGGACAATCGCGGTTATGATCTCCGGCACCTGTTCTGCGGCGCCGAAGGCACGCTCGGCGTCGTCACCGCCG
CGGCGCTGCACCTCGTCCGCGCGGCCACCGCGCGGCGCACGGCGTGGATCGGCGTCGAATCGCCAGAAACGGCGCTCGCG
CTGCTCCGCCGCCTCGACGCCGCGATCGGACGCACGCTCGAGGGGTTCGAGCTCATCCCGCACGCCTGTCTCGACGCGGT
GCTGCGCCACATTCCCGGCACGCGCGCGCCGCTCGCCGACGCACACCCATGGTATGTGCTCGCTGAGCTTGCGGGCGACG
ACGACACGGCGCTTGGCGATGCGCTCGAAGGACAGCTTGCCGCCGCGCTCGATGCCGGGCTGGTCCGCGATGTCGCACTC
GCCAAGAATGACCGCGAGAGCGACGATTTCTGGCGCCTGCGCGATTCGATTTCGGAAGCCGAGCGCGCCGATGGCCCGGC
GCTTCAGCATGACATCAGCGTTCCCGTCGACCTGATGCCCGCCTTCATCGCCGACAATCCCGTGCGGCTGGGGGCCGCCT
TCCCCGGCGCTCGCGCCCTCTCTTTCGGCCATCTCGGCGACGGCAATGTCCATCATCATGTCCAGCCGCCGCACGGCATC
GACGGCGCGGCATGGATCGCCGCGCACGGCGCCGATGTCAGCCGCCTCGTCTACACCCATGTCGTCGAGCTGGGCGGGTC
GATCTCGGCCGAACATGGCATCGGCCAGATGAAGCGCGACATCCTCGCCGAGCTCGACAGCCCCGCGCGACTGGCGGCGC
TGCGCGGCGTGAAGCACGGGCTCGACCCCGCGGGCATCTTCAATCCCGGCAAGCTGATCGGCTGA

Upstream 100 bases:

>100_bases
ATTTGTCGATCGCAGCTTTAGCGTCCATGATTGAACATCCAATGAACTGCAACGCCCGGCCGGATCGGCCACGAACACGG
GCAAAACGGAACCGAACGCC

Downstream 100 bases:

>100_bases
CGCTTCCCTCGCGTCGCGTCATCGCCCCCTTGCGCCGCGCGCGCCGGGTCAATAAGGCGCCTTATCTTTTTGCGTCCCCG
TCCGCGGGACTTTTACCGGA

Product: FAD linked oxidase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MPRRPSPSLLRALSDLLGVKGFSTDADAMAPWLTDWRGKYHGRAAAMLSPASTEEVAAVVRLCAEADAALVPQGGNSGMV
GGATPDASGDQLLLSLRRMNRVRHIDVAAGIAIAEAGVILQSFHDAVLTHGLRFPLTLGGKGSATIGGLVSTNAGGTQVL
RHGTMRALVAGIEAVLPDGSIFDGLAPLKKDNRGYDLRHLFCGAEGTLGVVTAAALHLVRAATARRTAWIGVESPETALA
LLRRLDAAIGRTLEGFELIPHACLDAVLRHIPGTRAPLADAHPWYVLAELAGDDDTALGDALEGQLAAALDAGLVRDVAL
AKNDRESDDFWRLRDSISEAERADGPALQHDISVPVDLMPAFIADNPVRLGAAFPGARALSFGHLGDGNVHHHVQPPHGI
DGAAWIAAHGADVSRLVYTHVVELGGSISAEHGIGQMKRDILAELDSPARLAALRGVKHGLDPAGIFNPGKLIG

Sequences:

>Translated_474_residues
MPRRPSPSLLRALSDLLGVKGFSTDADAMAPWLTDWRGKYHGRAAAMLSPASTEEVAAVVRLCAEADAALVPQGGNSGMV
GGATPDASGDQLLLSLRRMNRVRHIDVAAGIAIAEAGVILQSFHDAVLTHGLRFPLTLGGKGSATIGGLVSTNAGGTQVL
RHGTMRALVAGIEAVLPDGSIFDGLAPLKKDNRGYDLRHLFCGAEGTLGVVTAAALHLVRAATARRTAWIGVESPETALA
LLRRLDAAIGRTLEGFELIPHACLDAVLRHIPGTRAPLADAHPWYVLAELAGDDDTALGDALEGQLAAALDAGLVRDVAL
AKNDRESDDFWRLRDSISEAERADGPALQHDISVPVDLMPAFIADNPVRLGAAFPGARALSFGHLGDGNVHHHVQPPHGI
DGAAWIAAHGADVSRLVYTHVVELGGSISAEHGIGQMKRDILAELDSPARLAALRGVKHGLDPAGIFNPGKLIG
>Mature_473_residues
PRRPSPSLLRALSDLLGVKGFSTDADAMAPWLTDWRGKYHGRAAAMLSPASTEEVAAVVRLCAEADAALVPQGGNSGMVG
GATPDASGDQLLLSLRRMNRVRHIDVAAGIAIAEAGVILQSFHDAVLTHGLRFPLTLGGKGSATIGGLVSTNAGGTQVLR
HGTMRALVAGIEAVLPDGSIFDGLAPLKKDNRGYDLRHLFCGAEGTLGVVTAAALHLVRAATARRTAWIGVESPETALAL
LRRLDAAIGRTLEGFELIPHACLDAVLRHIPGTRAPLADAHPWYVLAELAGDDDTALGDALEGQLAAALDAGLVRDVALA
KNDRESDDFWRLRDSISEAERADGPALQHDISVPVDLMPAFIADNPVRLGAAFPGARALSFGHLGDGNVHHHVQPPHGID
GAAWIAAHGADVSRLVYTHVVELGGSISAEHGIGQMKRDILAELDSPARLAALRGVKHGLDPAGIFNPGKLIG

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=454, Percent_Identity=37.2246696035242, Blast_Score=281, Evalue=1e-75,
Organism=Homo sapiens, GI37595756, Length=441, Percent_Identity=28.3446712018141, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI37595754, Length=464, Percent_Identity=27.3706896551724, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI4501993, Length=201, Percent_Identity=26.865671641791, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1789351, Length=475, Percent_Identity=27.7894736842105, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787977, Length=498, Percent_Identity=25.7028112449799, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48994907, Length=248, Percent_Identity=26.2096774193548, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=473, Percent_Identity=32.5581395348837, Blast_Score=254, Evalue=1e-67,
Organism=Caenorhabditis elegans, GI71992373, Length=486, Percent_Identity=25.9259259259259, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71992381, Length=483, Percent_Identity=26.0869565217391, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71992392, Length=369, Percent_Identity=27.10027100271, Blast_Score=100, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320023, Length=462, Percent_Identity=33.1168831168831, Blast_Score=300, Evalue=3e-82,
Organism=Saccharomyces cerevisiae, GI6320764, Length=455, Percent_Identity=32.7472527472527, Blast_Score=273, Evalue=3e-74,
Organism=Saccharomyces cerevisiae, GI6320027, Length=441, Percent_Identity=26.530612244898, Blast_Score=141, Evalue=3e-34,
Organism=Drosophila melanogaster, GI18921117, Length=463, Percent_Identity=34.5572354211663, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24639277, Length=463, Percent_Identity=34.5572354211663, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24639275, Length=463, Percent_Identity=34.5572354211663, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24653753, Length=212, Percent_Identity=25, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49480; Mature: 49349

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRPSPSLLRALSDLLGVKGFSTDADAMAPWLTDWRGKYHGRAAAMLSPASTEEVAAVV
CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
RLCAEADAALVPQGGNSGMVGGATPDASGDQLLLSLRRMNRVRHIDVAAGIAIAEAGVIL
HHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSFHDAVLTHGLRFPLTLGGKGSATIGGLVSTNAGGTQVLRHGTMRALVAGIEAVLPDGS
HHHHHHHHHCCCCCCEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
IFDGLAPLKKDNRGYDLRHLFCGAEGTLGVVTAAALHLVRAATARRTAWIGVESPETALA
HHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHH
LLRRLDAAIGRTLEGFELIPHACLDAVLRHIPGTRAPLADAHPWYVLAELAGDDDTALGD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
ALEGQLAAALDAGLVRDVALAKNDRESDDFWRLRDSISEAERADGPALQHDISVPVDLMP
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AFIADNPVRLGAAFPGARALSFGHLGDGNVHHHVQPPHGIDGAAWIAAHGADVSRLVYTH
HHHCCCCEEECCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
VVELGGSISAEHGIGQMKRDILAELDSPARLAALRGVKHGLDPAGIFNPGKLIG
HHHHCCCCCCHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRRPSPSLLRALSDLLGVKGFSTDADAMAPWLTDWRGKYHGRAAAMLSPASTEEVAAVV
CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
RLCAEADAALVPQGGNSGMVGGATPDASGDQLLLSLRRMNRVRHIDVAAGIAIAEAGVIL
HHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSFHDAVLTHGLRFPLTLGGKGSATIGGLVSTNAGGTQVLRHGTMRALVAGIEAVLPDGS
HHHHHHHHHCCCCCCEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
IFDGLAPLKKDNRGYDLRHLFCGAEGTLGVVTAAALHLVRAATARRTAWIGVESPETALA
HHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHH
LLRRLDAAIGRTLEGFELIPHACLDAVLRHIPGTRAPLADAHPWYVLAELAGDDDTALGD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
ALEGQLAAALDAGLVRDVALAKNDRESDDFWRLRDSISEAERADGPALQHDISVPVDLMP
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AFIADNPVRLGAAFPGARALSFGHLGDGNVHHHVQPPHGIDGAAWIAAHGADVSRLVYTH
HHHCCCCEEECCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
VVELGGSISAEHGIGQMKRDILAELDSPARLAALRGVKHGLDPAGIFNPGKLIG
HHHHCCCCCCHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]