| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486424
Identifier: 103486424
GI number: 103486424
Start: 952461
End: 953051
Strand: Direct
Name: 103486424
Synonym: Sala_0934
Alternate gene names: NA
Gene position: 952461-953051 (Clockwise)
Preceding gene: 103486419
Following gene: 103486427
Centisome position: 28.47
GC content: 63.28
Gene sequence:
>591_bases ATGGCCCGCCGCGGCGGCCACCCGGATATTCTGCACCGAACGCCGCCTTTCGACGGGCTCGCTAACCTTCCTTTAACCAG TCAACTCCCACAAAAACATATGCCCATTTACGGACATTTCCTCCCCTTGGCGCCGAATGGCGACAAACGCCAGGACGTGC GCCGCAAACTGAGCCTGCTTGCCCGTGGCGTGAAGCATGACGGGACGGGTATCGCGGTCCAGATCCACAATATATCGGGA ACGGGACTGCTGTTTGAAAGCGACATCCAGCTGGAACCCTGTGACCGGATCGAAATCGAGCTACCCCATGCGGGCGGCAT CACGGCGGTCGTCATCTGGGCCAGCGGGCGGCTTTTCGGCTGCCAGTTCGAAGGCCCGGTATCCCCGGCGACGCTGAGCG CGGTGGAGTTGAAAAGCGCCGTCGCCCCGCCTCCTGAGGTCCAAGAGTCGGGCGCCGAACCGGCACTGGATGAATCCCCC GACGATGCTGCGCCCGAGCCGCTTCAGGAGGTGATCGACCGCAGCCGCGAACAGATCGCCCGTGCCGCGGGGCTTGGCAT CGACCGGGTCCGCATCATCGTCGAATATTAG
Upstream 100 bases:
>100_bases CTGGTCAGGAGAAGGTTACGCATGAAAGCGGTTTAGCGACGACGCGAGCGCGATCAAGCGCGTTCGTCGCGGACCGGCGG CCTTCGCCCAGCGCGTCCGC
Downstream 100 bases:
>100_bases GCAAGGAACGGGGGCCACGCGACGCTGCACGCTGATCCTAGCGTACCAGCACACCGCCCTTCATAACATGATCGATCGCC TCGAGCGCCGTGATGTCGGC
Product: type IV pilus assembly PilZ
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISG TGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESP DDAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY
Sequences:
>Translated_196_residues MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISG TGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESP DDAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY >Mature_195_residues ARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISGT GLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPD DAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21144; Mature: 21013
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH ARGVKHDGTGIAVQIHNISGTGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFG HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEE CQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPDDAAPEPLQEVIDRSREQIA EEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RAAGLGIDRVRIIVEY HHHCCCCEEEEEEEEC >Mature Secondary Structure ARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH ARGVKHDGTGIAVQIHNISGTGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFG HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEE CQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPDDAAPEPLQEVIDRSREQIA EEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RAAGLGIDRVRIIVEY HHHCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA