Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486424

Identifier: 103486424

GI number: 103486424

Start: 952461

End: 953051

Strand: Direct

Name: 103486424

Synonym: Sala_0934

Alternate gene names: NA

Gene position: 952461-953051 (Clockwise)

Preceding gene: 103486419

Following gene: 103486427

Centisome position: 28.47

GC content: 63.28

Gene sequence:

>591_bases
ATGGCCCGCCGCGGCGGCCACCCGGATATTCTGCACCGAACGCCGCCTTTCGACGGGCTCGCTAACCTTCCTTTAACCAG
TCAACTCCCACAAAAACATATGCCCATTTACGGACATTTCCTCCCCTTGGCGCCGAATGGCGACAAACGCCAGGACGTGC
GCCGCAAACTGAGCCTGCTTGCCCGTGGCGTGAAGCATGACGGGACGGGTATCGCGGTCCAGATCCACAATATATCGGGA
ACGGGACTGCTGTTTGAAAGCGACATCCAGCTGGAACCCTGTGACCGGATCGAAATCGAGCTACCCCATGCGGGCGGCAT
CACGGCGGTCGTCATCTGGGCCAGCGGGCGGCTTTTCGGCTGCCAGTTCGAAGGCCCGGTATCCCCGGCGACGCTGAGCG
CGGTGGAGTTGAAAAGCGCCGTCGCCCCGCCTCCTGAGGTCCAAGAGTCGGGCGCCGAACCGGCACTGGATGAATCCCCC
GACGATGCTGCGCCCGAGCCGCTTCAGGAGGTGATCGACCGCAGCCGCGAACAGATCGCCCGTGCCGCGGGGCTTGGCAT
CGACCGGGTCCGCATCATCGTCGAATATTAG

Upstream 100 bases:

>100_bases
CTGGTCAGGAGAAGGTTACGCATGAAAGCGGTTTAGCGACGACGCGAGCGCGATCAAGCGCGTTCGTCGCGGACCGGCGG
CCTTCGCCCAGCGCGTCCGC

Downstream 100 bases:

>100_bases
GCAAGGAACGGGGGCCACGCGACGCTGCACGCTGATCCTAGCGTACCAGCACACCGCCCTTCATAACATGATCGATCGCC
TCGAGCGCCGTGATGTCGGC

Product: type IV pilus assembly PilZ

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISG
TGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESP
DDAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY

Sequences:

>Translated_196_residues
MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISG
TGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESP
DDAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY
>Mature_195_residues
ARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLLARGVKHDGTGIAVQIHNISGT
GLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFGCQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPD
DAAPEPLQEVIDRSREQIARAAGLGIDRVRIIVEY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21144; Mature: 21013

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
ARGVKHDGTGIAVQIHNISGTGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFG
HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEE
CQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPDDAAPEPLQEVIDRSREQIA
EEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RAAGLGIDRVRIIVEY
HHHCCCCEEEEEEEEC
>Mature Secondary Structure 
ARRGGHPDILHRTPPFDGLANLPLTSQLPQKHMPIYGHFLPLAPNGDKRQDVRRKLSLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
ARGVKHDGTGIAVQIHNISGTGLLFESDIQLEPCDRIEIELPHAGGITAVVIWASGRLFG
HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEE
CQFEGPVSPATLSAVELKSAVAPPPEVQESGAEPALDESPDDAAPEPLQEVIDRSREQIA
EEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RAAGLGIDRVRIIVEY
HHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA