Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486382

Identifier: 103486382

GI number: 103486382

Start: 899994

End: 900422

Strand: Direct

Name: 103486382

Synonym: Sala_0892

Alternate gene names: NA

Gene position: 899994-900422 (Clockwise)

Preceding gene: 103486381

Following gene: 103486383

Centisome position: 26.9

GC content: 62.24

Gene sequence:

>429_bases
ATGGTTTATGGCCCCGCGCGCCTGCTTCCCGGCGATCAGATCCAGATCACCACCAACCCCGATACCGAACCTTTCTGGCA
AGCGGCACGAGAGCACAGGCTTACGGCCTGTCAGTGCGGCGAGTGCGGCGCGTTCCGGATGCCGCCCACGCCCGTCTGCC
CCCATTGCGGCAGCCGGAAAAAGGACTGGCCGACGCTTCCGGGCACGGCGACCGTCTTCAGCTATGTCATTTGCAACAAG
AATCCGAAGACGGGGGAGGATTTTGTCTATGTTCCCGTGGTCGTCGATCTGGACGGTGCGCCGGGGGCGCGGCTCAACGC
AAATGTCACCGGCTGCGATGCCGAAGAGGTGCATATCGGCATGAAGGTTGCGGTCGAATGGACGCCGATTCAGGAGGATT
GGGTGCTGCCCAATTTCCGCAAGGCCTGA

Upstream 100 bases:

>100_bases
GGCACTGCGATCAACCAGATTGCGGACGCCGAATTCGCCCTTGCGTCGGGTGGCCCTGCCGCGTTGCCCGTTTCCAGCCT
GATCCTGAGGAGGGACTGAC

Downstream 100 bases:

>100_bases
CCCGATGCTTGGCGACCTGAATATCGTCGAAATTGGGGAGGGGATGGCGGTCCAGGTTGCCGGCCTCATGCTGTCCGAGC
TGGGGGCCGACGTTTTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MVYGPARLLPGDQIQITTNPDTEPFWQAAREHRLTACQCGECGAFRMPPTPVCPHCGSRKKDWPTLPGTATVFSYVICNK
NPKTGEDFVYVPVVVDLDGAPGARLNANVTGCDAEEVHIGMKVAVEWTPIQEDWVLPNFRKA

Sequences:

>Translated_142_residues
MVYGPARLLPGDQIQITTNPDTEPFWQAAREHRLTACQCGECGAFRMPPTPVCPHCGSRKKDWPTLPGTATVFSYVICNK
NPKTGEDFVYVPVVVDLDGAPGARLNANVTGCDAEEVHIGMKVAVEWTPIQEDWVLPNFRKA
>Mature_142_residues
MVYGPARLLPGDQIQITTNPDTEPFWQAAREHRLTACQCGECGAFRMPPTPVCPHCGSRKKDWPTLPGTATVFSYVICNK
NPKTGEDFVYVPVVVDLDGAPGARLNANVTGCDAEEVHIGMKVAVEWTPIQEDWVLPNFRKA

Specific function: Unknown

COG id: COG1545

COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15626; Mature: 15626

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYGPARLLPGDQIQITTNPDTEPFWQAAREHRLTACQCGECGAFRMPPTPVCPHCGSRK
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
KDWPTLPGTATVFSYVICNKNPKTGEDFVYVPVVVDLDGAPGARLNANVTGCDAEEVHIG
CCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCEEEE
MKVAVEWTPIQEDWVLPNFRKA
EEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MVYGPARLLPGDQIQITTNPDTEPFWQAAREHRLTACQCGECGAFRMPPTPVCPHCGSRK
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
KDWPTLPGTATVFSYVICNKNPKTGEDFVYVPVVVDLDGAPGARLNANVTGCDAEEVHIG
CCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCEEEE
MKVAVEWTPIQEDWVLPNFRKA
EEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA