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The map label for this gene is qseB [H]

Identifier: 103486293

GI number: 103486293

Start: 807523

End: 808188

Strand: Direct

Name: qseB [H]

Synonym: Sala_0801

Alternate gene names: 103486293

Gene position: 807523-808188 (Clockwise)

Preceding gene: 103486292

Following gene: 103486294

Centisome position: 24.14

GC content: 63.36

Gene sequence:

>666_bases
ATGCGGATCTTGATTGTCGAAGACGAACCCACGCTGGGGCCGCAGCTCAAAGCGACGCTGGAGGGGGCGGGCTATGCCGT
CGACCTCGCGACCGATGGCGAGGACGGGCATTTTCTTGGCTCGACCGAAACCTATGACGCTGCGATTCTCGACCTCGGCC
TCCCCGAAATCGACGGATTGACCGTGCTCGACCGTTGGCGGCGCGAAAAGCGCAACTTTCCGGTTCTCGTGCTGACGGCG
CGCGACAGCTGGTCGGACAAGGTGGCGGGGCTCGACGCCGGTGCCGACGACTATCTCGCCAAACCCTTCCAGACCGAGGA
ACTGATCGCCCGCCTGCGCGCGCTGATCCGCCGCGCGTCGGGCAATGCGTCGAGCGAACTCACCGCGGGCGATGTCCGGC
TCGATACACGATCGGGCCGCGTCACCCTCGCCGGCGAGCCGGTGAAGCTCACCGCGCAGGAATATAAGCTCCTCTCCTAC
CTGCTCCACCACAAGGGCAAGGTCGTGTCGCGCACCGAGTTGATCGAACATATCTATGACCAGGATTTCGATCGCGATTC
GAACACGATCGAGGTTTTCGTCACGCGCATCCGCAAGAAACTGGGCGCCGACATCATCACCACGATCCGCGGTCTCGGCT
ATCAGCTCGACGACCCGCAGGGTTGA

Upstream 100 bases:

>100_bases
TACCGACGCGCAACCAATTTTTTGCGATGAACGTGCGGACTTGATACACAGTCGAAACATGCCACCGGCACCAGTCGGCG
GGCCAAGGAAAGGCGCCTGA

Downstream 100 bases:

>100_bases
CCATGCGCCATTCCTGTTTCCCTGCCGTCATCCCGGCGAAGGCCGGGATCTCGCCGGTGCGCGGTGACGACAGGGAGAGA
TTCCGGCCTTTGCCGGAATG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGLTVLDRWRREKRNFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGADIITTIRGLGYQLDDPQG

Sequences:

>Translated_221_residues
MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGLTVLDRWRREKRNFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGADIITTIRGLGYQLDDPQG
>Mature_221_residues
MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGLTVLDRWRREKRNFPVLVLTA
RDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSY
LLHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGADIITTIRGLGYQLDDPQG

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=45.8715596330275, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=44.0366972477064, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=41.1504424778761, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=45.3703703703704, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=39.0909090909091, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=35.5855855855856, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=37.5565610859729, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788394, Length=221, Percent_Identity=34.841628959276, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=35.3711790393013, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=31.5555555555556, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.4841628959276, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=31.0810810810811, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=33.6283185840708, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=27.7056277056277, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790437, Length=110, Percent_Identity=34.5454545454545, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24480; Mature: 24480

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL
CEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCCC
TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS
HHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD
CCCCCCEEECCEEEECCCCEEEECCCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
QDFDRDSNTIEVFVTRIRKKLGADIITTIRGLGYQLDDPQG
CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL
CEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCCCC
TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS
HHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD
CCCCCCEEECCEEEECCCCEEEECCCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
QDFDRDSNTIEVFVTRIRKKLGADIITTIRGLGYQLDDPQG
CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]