| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486271
Identifier: 103486271
GI number: 103486271
Start: 786122
End: 786463
Strand: Direct
Name: 103486271
Synonym: Sala_0779
Alternate gene names: NA
Gene position: 786122-786463 (Clockwise)
Preceding gene: 103486269
Following gene: 103486274
Centisome position: 23.5
GC content: 66.08
Gene sequence:
>342_bases ATGCGCAAGGGACCGTCAATCGACGTGCCCGTGCTATGGGAGTATCGCCGCAAGGATTTGCCGGTGAAAGTGATCGCGCG TCACGAAAACTGGCGCCGCGTCGAGGATCCCGACGGCGCGCGCGGCTGGATGGCGGCGCGGCTTCTGAGCCGCACGCGTA CCGCGATCGTCACCGGCGCGATCCGCCCGATGCGTGAGGAACCGAGTACGACCGCGGCGGTCGCCTATCGTGCCGCACCC GGCGTCGTCGGTCGGATAACCGATTGCCAGAACGGCTGGTGCCGCTTCGACGTCAAGGGGCGCAAGGGCTGGATCCAGAC CGATCATATCTGGGGTGATTGA
Upstream 100 bases:
>100_bases CGCCCTGATCTTGTTCTGCCTTGCCGCCGCGGCACCGGCATCGGCGCAATCAGACCCCGAATTACCCTATTGGGCCTCGA TCAGCGTCGACGAGGCGCGG
Downstream 100 bases:
>100_bases CGGCAGCGGGGTGTGGGGGTTTCGACCGATTGCGGACCTTTATTCCATCGTCATCCCGGCGAAGGCCGGGATCTCACCCT TTCGGTTTGCCGCACCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 113; Mature: 113
Protein sequence:
>113_residues MRKGPSIDVPVLWEYRRKDLPVKVIARHENWRRVEDPDGARGWMAARLLSRTRTAIVTGAIRPMREEPSTTAAVAYRAAP GVVGRITDCQNGWCRFDVKGRKGWIQTDHIWGD
Sequences:
>Translated_113_residues MRKGPSIDVPVLWEYRRKDLPVKVIARHENWRRVEDPDGARGWMAARLLSRTRTAIVTGAIRPMREEPSTTAAVAYRAAP GVVGRITDCQNGWCRFDVKGRKGWIQTDHIWGD >Mature_113_residues MRKGPSIDVPVLWEYRRKDLPVKVIARHENWRRVEDPDGARGWMAARLLSRTRTAIVTGAIRPMREEPSTTAAVAYRAAP GVVGRITDCQNGWCRFDVKGRKGWIQTDHIWGD
Specific function: Unknown
COG id: COG3807
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12911; Mature: 12911
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGPSIDVPVLWEYRRKDLPVKVIARHENWRRVEDPDGARGWMAARLLSRTRTAIVTGA CCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECC IRPMREEPSTTAAVAYRAAPGVVGRITDCQNGWCRFDVKGRKGWIQTDHIWGD CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCCCC >Mature Secondary Structure MRKGPSIDVPVLWEYRRKDLPVKVIARHENWRRVEDPDGARGWMAARLLSRTRTAIVTGA CCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECC IRPMREEPSTTAAVAYRAAPGVVGRITDCQNGWCRFDVKGRKGWIQTDHIWGD CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA