| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486245
Identifier: 103486245
GI number: 103486245
Start: 759986
End: 761383
Strand: Direct
Name: 103486245
Synonym: Sala_0753
Alternate gene names: NA
Gene position: 759986-761383 (Clockwise)
Preceding gene: 103486239
Following gene: 103486246
Centisome position: 22.72
GC content: 56.94
Gene sequence:
>1398_bases ATGAAATCGAATCAGCAAATTGTCGTTGATGCCGTGGCCGAAGGCGATGGCGTCAGGCTTTCGATCACAGCCGATGGGCG GACACGTGAATATACGATCGCAGGCAGCAGCCACGCGGACTACCAGGCATTTTTTTCCCGGCTGGCAGACGATATCGGCT CACGCGCTCCGCATGTGTTTGACGGGCCTGGCGTAGAAACGACCGACTCGGGCGTTTGGAAACCGCTGATCACCCAGAAT CTGAGCCCGCTGACCAGCGCCGGCTATGGTGACCCTGCGGTGCTCAAGACGGACGAAGGTTATTACCTTGTCGCCACGTC CAACGATGCCCCCGACGCCTTTCCGATTCTGTTCAGTGCCGATCTCGAACATTGGGAGCATAAGGGATTTGTATTTGCCG AAGGGCATGCGCCCGAATGGACTGCGCATGGTCGTCATGTCGGGGATTATTGGGCACCCGAAATGGCCAGAGTGGGCGAT GAATACTGGCTGGTGTATACCGCTCGCCAGCACAACAATGCTCTTGCGATCGGAATGGCCAAAAGTAATCATCCTGAAGG TCCGTGGCGCGACCTCGGGCGACCTCTTATTGCCGGTTTTGCTTATAACACCACAGGAATGACCCAAGACGGCACACAGC CGGTCATGAGCGGCGGCGTCATCGACAGCCATATCTTCATCGACCGAAATGGCGACCGCTACCTGTACTGGAAAAGGGAC ACCAACGGCGTCTGGCCGCGTCCGTTAGCCGGATTGATCGGCAAACGACCCGAACTGATCGAGCAGCTGTTTTCTGCGCC GGCAGACCGCAAAACGGCGGCCGTCGCCGCCGCTCTGCTTCCCTTCGCCCAGACACGGCGCCCGATGGAACGTTTCTTCT TCATGCAGCCGTTGATTGAGGCGGTGATTGATAACTGGCGTCATGTGAAGGCGACGCTCGCAAGCTATCCCGATGCATCA CTGATTTGTGAGGCCATGAGCACACCAATATACGCTCAGCGAATGTCGGAAACCGGGGAGTTGGTCGGCGACAAGACCGT TGTTCTTGTGAACGATCTTGACTGGGAGGGGCACCTGATCGAGGGTCCGTGGGTTACGTTGCAGGAAAATCGATACTGGC TTTTTTACGCCGGAAACGATTTCGGCACACCAGCCTATGGCATCGGTGTCGCGGTTGCCGACCACCCGCTGGGACCATAT GAGAAGCAGCCGGAGCCGTTGCTCAGGTCCAGACCCGATTGGTGGGCGCCGGGGCACGCATCCGTTGCTTCGGGACTCGA CGGTAAGCCGCAGTTGTTCTTCCATGCGTTTTTTCCGAACACGGGCGGATACAACACTTTCAGGGCGCTATTGACGGCAG AATTAACATTCGACCATAAAAAGGTAAGCTTGAAGTAA
Upstream 100 bases:
>100_bases AGCGGGTCCTCGGTCACCCAGCGCCTCCCTTTCGCCATTTAATCATATAAATCTTATTTAGCCCCTTCCCTCGGATTTTG CGAGTCGGTAATGCGGCGCG
Downstream 100 bases:
>100_bases AACAAAGAATCCAGGTCGTCGGTAGCGTGACAGATCGTATCGCTCGACGGACTGCCTCTGTCGTGCGGGCGCTCCCGTGT AAAAGCTGGCCCATATCCCT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Xylosidase; Endo-1 4-Beta-Xylanase; LPXTG-Motif Cell Wall Anchor Domain Protein; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family Beta-Glycosidase; Glycosyl Hydrolase Family; Glycoside Hydrolase
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MKSNQQIVVDAVAEGDGVRLSITADGRTREYTIAGSSHADYQAFFSRLADDIGSRAPHVFDGPGVETTDSGVWKPLITQN LSPLTSAGYGDPAVLKTDEGYYLVATSNDAPDAFPILFSADLEHWEHKGFVFAEGHAPEWTAHGRHVGDYWAPEMARVGD EYWLVYTARQHNNALAIGMAKSNHPEGPWRDLGRPLIAGFAYNTTGMTQDGTQPVMSGGVIDSHIFIDRNGDRYLYWKRD TNGVWPRPLAGLIGKRPELIEQLFSAPADRKTAAVAAALLPFAQTRRPMERFFFMQPLIEAVIDNWRHVKATLASYPDAS LICEAMSTPIYAQRMSETGELVGDKTVVLVNDLDWEGHLIEGPWVTLQENRYWLFYAGNDFGTPAYGIGVAVADHPLGPY EKQPEPLLRSRPDWWAPGHASVASGLDGKPQLFFHAFFPNTGGYNTFRALLTAELTFDHKKVSLK
Sequences:
>Translated_465_residues MKSNQQIVVDAVAEGDGVRLSITADGRTREYTIAGSSHADYQAFFSRLADDIGSRAPHVFDGPGVETTDSGVWKPLITQN LSPLTSAGYGDPAVLKTDEGYYLVATSNDAPDAFPILFSADLEHWEHKGFVFAEGHAPEWTAHGRHVGDYWAPEMARVGD EYWLVYTARQHNNALAIGMAKSNHPEGPWRDLGRPLIAGFAYNTTGMTQDGTQPVMSGGVIDSHIFIDRNGDRYLYWKRD TNGVWPRPLAGLIGKRPELIEQLFSAPADRKTAAVAAALLPFAQTRRPMERFFFMQPLIEAVIDNWRHVKATLASYPDAS LICEAMSTPIYAQRMSETGELVGDKTVVLVNDLDWEGHLIEGPWVTLQENRYWLFYAGNDFGTPAYGIGVAVADHPLGPY EKQPEPLLRSRPDWWAPGHASVASGLDGKPQLFFHAFFPNTGGYNTFRALLTAELTFDHKKVSLK >Mature_465_residues MKSNQQIVVDAVAEGDGVRLSITADGRTREYTIAGSSHADYQAFFSRLADDIGSRAPHVFDGPGVETTDSGVWKPLITQN LSPLTSAGYGDPAVLKTDEGYYLVATSNDAPDAFPILFSADLEHWEHKGFVFAEGHAPEWTAHGRHVGDYWAPEMARVGD EYWLVYTARQHNNALAIGMAKSNHPEGPWRDLGRPLIAGFAYNTTGMTQDGTQPVMSGGVIDSHIFIDRNGDRYLYWKRD TNGVWPRPLAGLIGKRPELIEQLFSAPADRKTAAVAAALLPFAQTRRPMERFFFMQPLIEAVIDNWRHVKATLASYPDAS LICEAMSTPIYAQRMSETGELVGDKTVVLVNDLDWEGHLIEGPWVTLQENRYWLFYAGNDFGTPAYGIGVAVADHPLGPY EKQPEPLLRSRPDWWAPGHASVASGLDGKPQLFFHAFFPNTGGYNTFRALLTAELTFDHKKVSLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51510; Mature: 51510
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNQQIVVDAVAEGDGVRLSITADGRTREYTIAGSSHADYQAFFSRLADDIGSRAPHVF CCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC DGPGVETTDSGVWKPLITQNLSPLTSAGYGDPAVLKTDEGYYLVATSNDAPDAFPILFSA CCCCCCCCCCCCCCHHHHCCCCCHHCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEC DLEHWEHKGFVFAEGHAPEWTAHGRHVGDYWAPEMARVGDEYWLVYTARQHNNALAIGMA CHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEEEEE KSNHPEGPWRDLGRPLIAGFAYNTTGMTQDGTQPVMSGGVIDSHIFIDRNGDRYLYWKRD CCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCHHHCCCEEEEEEEEECCCCEEEEEEEC TNGVWPRPLAGLIGKRPELIEQLFSAPADRKTAAVAAALLPFAQTRRPMERFFFMQPLIE CCCCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AVIDNWRHVKATLASYPDASLICEAMSTPIYAQRMSETGELVGDKTVVLVNDLDWEGHLI HHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE EGPWVTLQENRYWLFYAGNDFGTPAYGIGVAVADHPLGPYEKQPEPLLRSRPDWWAPGHA CCCEEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCH SVASGLDGKPQLFFHAFFPNTGGYNTFRALLTAELTFDHKKVSLK HHHCCCCCCCEEEEEEECCCCCCHHHHHHHEEEEEEECCEEEECC >Mature Secondary Structure MKSNQQIVVDAVAEGDGVRLSITADGRTREYTIAGSSHADYQAFFSRLADDIGSRAPHVF CCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC DGPGVETTDSGVWKPLITQNLSPLTSAGYGDPAVLKTDEGYYLVATSNDAPDAFPILFSA CCCCCCCCCCCCCCHHHHCCCCCHHCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEEEC DLEHWEHKGFVFAEGHAPEWTAHGRHVGDYWAPEMARVGDEYWLVYTARQHNNALAIGMA CHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEEEEE KSNHPEGPWRDLGRPLIAGFAYNTTGMTQDGTQPVMSGGVIDSHIFIDRNGDRYLYWKRD CCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCHHHCCCEEEEEEEEECCCCEEEEEEEC TNGVWPRPLAGLIGKRPELIEQLFSAPADRKTAAVAAALLPFAQTRRPMERFFFMQPLIE CCCCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AVIDNWRHVKATLASYPDASLICEAMSTPIYAQRMSETGELVGDKTVVLVNDLDWEGHLI HHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE EGPWVTLQENRYWLFYAGNDFGTPAYGIGVAVADHPLGPYEKQPEPLLRSRPDWWAPGHA CCCEEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCH SVASGLDGKPQLFFHAFFPNTGGYNTFRALLTAELTFDHKKVSLK HHHCCCCCCCEEEEEEECCCCCCHHHHHHHEEEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA