| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ybbP [H]
Identifier: 103486191
GI number: 103486191
Start: 703941
End: 706442
Strand: Reverse
Name: ybbP [H]
Synonym: Sala_0698
Alternate gene names: 103486191
Gene position: 706442-703941 (Counterclockwise)
Preceding gene: 103486192
Following gene: 103486183
Centisome position: 21.12
GC content: 68.75
Gene sequence:
>2502_bases ATGCTACCCCTCGCCTCACTCTGGCGCATCGCCCGCCGCGACCTTGCCGCGCGCATTCGCGGGCTGCGCCTGCTCGCCGT CTGCCTGTTCCTCGGCGTCGCAACGCTCGCGGCGATCGGCAGCCTGACGCGCGGCATCACCAGCGAACTTGAAGTGCGCG GGCAAACGATCCTGGGCGGCGACGTCGAGTTCAGCCTGCCGCAACGCGAAGCCACATCGGAGGAAATGGCCGCCTTTCGC CGCGTCGGCACACCGTCGGCCACCGTGCGGATGCGCGCGATGGCGAACGATCCCGACGGCGATGCGCTGCTGTCCGAACT GAAAGCGGTCGATAGCGCCTATCCGCTCTATGGCGCGCTGCGGCTCGAAAGCGGTGTGCGGCAGGGACCGCCGCCGCCGG GCGCGATCTGGATCGGCAAGGACATGGCCTCGCGCCTTGATCTCAAGGTTGGCGGGCAGGTCAAGTTCGGCGACAAATCT TTCCTGATCGACGGCATCATTGCCGAGGAGCCTGACCGGCTGGGCGAAGGCTTTACGCTGGGCCCGGTCGCGATCATCGG CCTTGACGACCTGCCTGCGACGCGGCTGATCCAGCCGGGCAGCCTATATGAAAGCAAATATCGCCTGCGCCTGCCCGCGA GCGCCGATCCCGAAGCGGTTGGCGAAGCGTTGACCGAACAATTTCCGGACGCCGGCTGGGACATCACCGATCGCAGCAAC GGCGCGCCGGGCACGCGGCGCTTTATCGAACGCATGGGGCAATTCCTGTCGCTGGTCGGCCTCGCCGCGCTGGTGATCGC CGGGATCGGCGTTGGCAATGGCGTCGCCAGCTATCTTGCGGGCAAACGGCCGGGCCTCGCGACATTGAAAGTGCTCGGCG CCGACAGCGCGACGGTGCTGCGCATCTATGGGTTGCAGATACTGGCGGTCGCGACGGTATCGATCGTCGCAGGGCTGGCG GTCGGCGCACTTGCGCCCGCCGCGATCGGCTGGATCGCAGGCGACGTGCTGCCGGTGCGGCCTGGGTTCGCGCTCTATCC GCTGCCGCTTGGCGTCAGTGCCGCCTATGGCCTGCTCATCGCCATCGCCTTTGCCTTGCCGCCGCTTGCGGCGACGAAGC ATGTGCCCGCGGCAGGGCTGTATCGCGCGACGGTCGACCGCGCGGCGCGGATCGACCGGCCCGCGCTCATTGCCGTTGCC GTGGCCTTTGTGGCAATCGTCGCGCTCGCGGTCGGCACCGCGCGCGAGCCGCTGTTTGCGCTGGGCTTCGTCGGGGCAGC GACCGGCCTGCTCCTGATTCTCGTTGTGCTCGGCTGGCTGGTGCGCCGCATCGCGAGCCGCCTGCCGCGTCCGCGCCGCC CGCTGCTGCGCCTCGCGCTTGCGAACCTGCACCGCCCCGGCGCCGCGACCGGCGCGCTTGTCGTCGCGCTCGGCCTGGGC CTCACCCTCTTCGTGACGCTCGCGGCGATCCAGACGAGCATCACCGCCGAAATCGCCCGCACCGTGCCGCAGCGCGCGCC GAGCTTCTTCGTGCTCGACGTGCCGCGCAGCGATGCGGCGCGCTTCCGCTCCATCGTGACGGAGGCCGACCCAAAGGCCG AAATCAACATGATACCCGCGCTGCGCGGCAGCATCACCGAGTTTGCGGGCAGCCGTGTCGACGAACTCGCCGAACTGCCC GAAGGCGCGTGGGTGCTGCGCGGCGACCGCGGGCTGACCTACAGCGCCAACTTGCCGAACGGCAGCGAGCTGGTCGGCGG CAGCTGGTGGGCGGCGGATTATGCGGGGCCGCCGCTGGTCAGCGTCGAGCAGGAGGTGGCGACCTCACTCGGCCTGAAAC TCGGCGATACGCTGTCGGTCAATGTGCTGGGGGTCGAGGTCCAGGCAAAGGTCGCATCGTTCCGCACCGTCAATTGGGAC AATTTCGGGCTGAACTATGTGCTGGTCTTTTCGCCGGGCACGTTCGATGCGGCGCCGCACAATATGGTCGCGACCATCGC CGTTGACGGCGCGGCCGAAGAAGATCTGGCGCGTCGCATCCCGCGCGCCTTCCCCTCCGCCTCGCTGATCGCGGTGCGCG ATGTCGTCAGCCAGGTCACATTGCTCCTCACCCAGATGAGCCAGGCGATCGCCGCGGCGGCGAGCATCGCGATCCTCGCC GGCATCGCGGTGCTGATCGGTGCGATCGCCGCGAGCCGCGAACGGCGCGTCTATGACAGCGTGATCCTGAAGCTGCTCGG CGCCACAAGAGGCCAGATTCTCGGCGCGCAGGCGATGGAATATGCGGCGCTCGCGGCGGTGCTGGCGGTACTGGCCTTGG GGCTTGGCCTGATCGCGGCGCGCTATGTCGTCGTCAGCCTGTTCGAGTTCGGCTTCGCGCCCGACCCGCTGATCGTCGGT GCGACGCTGATCGGCGGCGCGGGCCTGTCCTTCCTGATCGGCATCGCGGGAAGCTGGCCCTTGCTGTCGGTGAAACCGGC GCAGGCGCTGCGGAGTCTTTGA
Upstream 100 bases:
>100_bases GCTCGCATCGAGCGAAGTCGAGATGCCCCTCGACCTTGCTCCGTTTCGATGGGTGTCTCGACTTCGCTCGACACGAACGG GCTGAGAGGGCGCAGCTCTG
Downstream 100 bases:
>100_bases TCCTTATACGCGAGGTGGCGTCAGGGTCGATAAAGAAGGCCGAGCCGTTCCGCCTGTTCCGCGAGCCGCCGATCGCTCGT CCAGAGCCGTGCGGCGCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MLPLASLWRIARRDLAARIRGLRLLAVCLFLGVATLAAIGSLTRGITSELEVRGQTILGGDVEFSLPQREATSEEMAAFR RVGTPSATVRMRAMANDPDGDALLSELKAVDSAYPLYGALRLESGVRQGPPPPGAIWIGKDMASRLDLKVGGQVKFGDKS FLIDGIIAEEPDRLGEGFTLGPVAIIGLDDLPATRLIQPGSLYESKYRLRLPASADPEAVGEALTEQFPDAGWDITDRSN GAPGTRRFIERMGQFLSLVGLAALVIAGIGVGNGVASYLAGKRPGLATLKVLGADSATVLRIYGLQILAVATVSIVAGLA VGALAPAAIGWIAGDVLPVRPGFALYPLPLGVSAAYGLLIAIAFALPPLAATKHVPAAGLYRATVDRAARIDRPALIAVA VAFVAIVALAVGTAREPLFALGFVGAATGLLLILVVLGWLVRRIASRLPRPRRPLLRLALANLHRPGAATGALVVALGLG LTLFVTLAAIQTSITAEIARTVPQRAPSFFVLDVPRSDAARFRSIVTEADPKAEINMIPALRGSITEFAGSRVDELAELP EGAWVLRGDRGLTYSANLPNGSELVGGSWWAADYAGPPLVSVEQEVATSLGLKLGDTLSVNVLGVEVQAKVASFRTVNWD NFGLNYVLVFSPGTFDAAPHNMVATIAVDGAAEEDLARRIPRAFPSASLIAVRDVVSQVTLLLTQMSQAIAAAASIAILA GIAVLIGAIAASRERRVYDSVILKLLGATRGQILGAQAMEYAALAAVLAVLALGLGLIAARYVVVSLFEFGFAPDPLIVG ATLIGGAGLSFLIGIAGSWPLLSVKPAQALRSL
Sequences:
>Translated_833_residues MLPLASLWRIARRDLAARIRGLRLLAVCLFLGVATLAAIGSLTRGITSELEVRGQTILGGDVEFSLPQREATSEEMAAFR RVGTPSATVRMRAMANDPDGDALLSELKAVDSAYPLYGALRLESGVRQGPPPPGAIWIGKDMASRLDLKVGGQVKFGDKS FLIDGIIAEEPDRLGEGFTLGPVAIIGLDDLPATRLIQPGSLYESKYRLRLPASADPEAVGEALTEQFPDAGWDITDRSN GAPGTRRFIERMGQFLSLVGLAALVIAGIGVGNGVASYLAGKRPGLATLKVLGADSATVLRIYGLQILAVATVSIVAGLA VGALAPAAIGWIAGDVLPVRPGFALYPLPLGVSAAYGLLIAIAFALPPLAATKHVPAAGLYRATVDRAARIDRPALIAVA VAFVAIVALAVGTAREPLFALGFVGAATGLLLILVVLGWLVRRIASRLPRPRRPLLRLALANLHRPGAATGALVVALGLG LTLFVTLAAIQTSITAEIARTVPQRAPSFFVLDVPRSDAARFRSIVTEADPKAEINMIPALRGSITEFAGSRVDELAELP EGAWVLRGDRGLTYSANLPNGSELVGGSWWAADYAGPPLVSVEQEVATSLGLKLGDTLSVNVLGVEVQAKVASFRTVNWD NFGLNYVLVFSPGTFDAAPHNMVATIAVDGAAEEDLARRIPRAFPSASLIAVRDVVSQVTLLLTQMSQAIAAAASIAILA GIAVLIGAIAASRERRVYDSVILKLLGATRGQILGAQAMEYAALAAVLAVLALGLGLIAARYVVVSLFEFGFAPDPLIVG ATLIGGAGLSFLIGIAGSWPLLSVKPAQALRSL >Mature_833_residues MLPLASLWRIARRDLAARIRGLRLLAVCLFLGVATLAAIGSLTRGITSELEVRGQTILGGDVEFSLPQREATSEEMAAFR RVGTPSATVRMRAMANDPDGDALLSELKAVDSAYPLYGALRLESGVRQGPPPPGAIWIGKDMASRLDLKVGGQVKFGDKS FLIDGIIAEEPDRLGEGFTLGPVAIIGLDDLPATRLIQPGSLYESKYRLRLPASADPEAVGEALTEQFPDAGWDITDRSN GAPGTRRFIERMGQFLSLVGLAALVIAGIGVGNGVASYLAGKRPGLATLKVLGADSATVLRIYGLQILAVATVSIVAGLA VGALAPAAIGWIAGDVLPVRPGFALYPLPLGVSAAYGLLIAIAFALPPLAATKHVPAAGLYRATVDRAARIDRPALIAVA VAFVAIVALAVGTAREPLFALGFVGAATGLLLILVVLGWLVRRIASRLPRPRRPLLRLALANLHRPGAATGALVVALGLG LTLFVTLAAIQTSITAEIARTVPQRAPSFFVLDVPRSDAARFRSIVTEADPKAEINMIPALRGSITEFAGSRVDELAELP EGAWVLRGDRGLTYSANLPNGSELVGGSWWAADYAGPPLVSVEQEVATSLGLKLGDTLSVNVLGVEVQAKVASFRTVNWD NFGLNYVLVFSPGTFDAAPHNMVATIAVDGAAEEDLARRIPRAFPSASLIAVRDVVSQVTLLLTQMSQAIAAAASIAILA GIAVLIGAIAASRERRVYDSVILKLLGATRGQILGAQAMEYAALAAVLAVLALGLGLIAARYVVVSLFEFGFAPDPLIVG ATLIGGAGLSFLIGIAGSWPLLSVKPAQALRSL
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=794, Percent_Identity=24.6851385390428, Blast_Score=171, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 86803; Mature: 86803
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPLASLWRIARRDLAARIRGLRLLAVCLFLGVATLAAIGSLTRGITSELEVRGQTILGG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC DVEFSLPQREATSEEMAAFRRVGTPSATVRMRAMANDPDGDALLSELKAVDSAYPLYGAL CEEECCCCCCCCHHHHHHHHHCCCCCHHEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH RLESGVRQGPPPPGAIWIGKDMASRLDLKVGGQVKFGDKSFLIDGIIAEEPDRLGEGFTL HHHCCCCCCCCCCCEEEECCHHHHHCCEEECCEEEECCCHHEECCHHHCCCHHHCCCCEE GPVAIIGLDDLPATRLIQPGSLYESKYRLRLPASADPEAVGEALTEQFPDAGWDITDRSN CCEEEEECCCCCHHHCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GAPGTRRFIERMGQFLSLVGLAALVIAGIGVGNGVASYLAGKRPGLATLKVLGADSATVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHH RIYGLQILAVATVSIVAGLAVGALAPAAIGWIAGDVLPVRPGFALYPLPLGVSAAYGLLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHHHHH AIAFALPPLAATKHVPAAGLYRATVDRAARIDRPALIAVAVAFVAIVALAVGTAREPLFA HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH LGFVGAATGLLLILVVLGWLVRRIASRLPRPRRPLLRLALANLHRPGAATGALVVALGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH LTLFVTLAAIQTSITAEIARTVPQRAPSFFVLDVPRSDAARFRSIVTEADPKAEINMIPA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECHH LRGSITEFAGSRVDELAELPEGAWVLRGDRGLTYSANLPNGSELVGGSWWAADYAGPPLV HHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC SVEQEVATSLGLKLGDTLSVNVLGVEVQAKVASFRTVNWDNFGLNYVLVFSPGTFDAAPH CHHHHHHHHHCCCCCCEEEEEEEEEEEEEHHHHHEECCCCCCCCEEEEEECCCCCCCCCC NMVATIAVDGAAEEDLARRIPRAFPSASLIAVRDVVSQVTLLLTQMSQAIAAAASIAILA CEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAVLIGAIAASRERRVYDSVILKLLGATRGQILGAQAMEYAALAAVLAVLALGLGLIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYVVVSLFEFGFAPDPLIVGATLIGGAGLSFLIGIAGSWPLLSVKPAQALRSL HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEECHHHHHHCC >Mature Secondary Structure MLPLASLWRIARRDLAARIRGLRLLAVCLFLGVATLAAIGSLTRGITSELEVRGQTILGG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC DVEFSLPQREATSEEMAAFRRVGTPSATVRMRAMANDPDGDALLSELKAVDSAYPLYGAL CEEECCCCCCCCHHHHHHHHHCCCCCHHEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH RLESGVRQGPPPPGAIWIGKDMASRLDLKVGGQVKFGDKSFLIDGIIAEEPDRLGEGFTL HHHCCCCCCCCCCCEEEECCHHHHHCCEEECCEEEECCCHHEECCHHHCCCHHHCCCCEE GPVAIIGLDDLPATRLIQPGSLYESKYRLRLPASADPEAVGEALTEQFPDAGWDITDRSN CCEEEEECCCCCHHHCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GAPGTRRFIERMGQFLSLVGLAALVIAGIGVGNGVASYLAGKRPGLATLKVLGADSATVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHH RIYGLQILAVATVSIVAGLAVGALAPAAIGWIAGDVLPVRPGFALYPLPLGVSAAYGLLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHHHHH AIAFALPPLAATKHVPAAGLYRATVDRAARIDRPALIAVAVAFVAIVALAVGTAREPLFA HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH LGFVGAATGLLLILVVLGWLVRRIASRLPRPRRPLLRLALANLHRPGAATGALVVALGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH LTLFVTLAAIQTSITAEIARTVPQRAPSFFVLDVPRSDAARFRSIVTEADPKAEINMIPA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECHH LRGSITEFAGSRVDELAELPEGAWVLRGDRGLTYSANLPNGSELVGGSWWAADYAGPPLV HHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC SVEQEVATSLGLKLGDTLSVNVLGVEVQAKVASFRTVNWDNFGLNYVLVFSPGTFDAAPH CHHHHHHHHHCCCCCCEEEEEEEEEEEEEHHHHHEECCCCCCCCEEEEEECCCCCCCCCC NMVATIAVDGAAEEDLARRIPRAFPSASLIAVRDVVSQVTLLLTQMSQAIAAAASIAILA CEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIAVLIGAIAASRERRVYDSVILKLLGATRGQILGAQAMEYAALAAVLAVLALGLGLIAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RYVVVSLFEFGFAPDPLIVGATLIGGAGLSFLIGIAGSWPLLSVKPAQALRSL HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEECHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]