| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486180
Identifier: 103486180
GI number: 103486180
Start: 695706
End: 696470
Strand: Reverse
Name: 103486180
Synonym: Sala_0687
Alternate gene names: NA
Gene position: 696470-695706 (Counterclockwise)
Preceding gene: 103486181
Following gene: 103486179
Centisome position: 20.82
GC content: 69.54
Gene sequence:
>765_bases TTGTCCGAACCCTCCGCCACTCATTATCTCGACCGCACAGGCCGCCCACGGCTCGCCTATCGTTTCACGCCCGGCGCGGG GCCGACGATCGTCTTCCTGCCCGGCTATATGTCCGACATGGCGGGGGGCAAGGCGACCGCGCTGTTCGATTGGGCCGCCG CCGAAGCGCGCGCGTGCCTGTTGCTCGACTATGCCGGGTGCGGGCTGTCGGACGGGCTGTTCGCCGAGCAGACCTTGCTC GACTGGCGCGGCGATGTGCTCGACCTGATCGATGCGAAGGTCGATGGCCCCGTCATCCTCGTCGGCTCGTCGATGGGCGG CTGGCTGATGCTGCTCACCGCGCTCGCGATCGTCCGGCGCGACGGGCCGGGCCGCGTCGCGGGGCTGGTCGGCATCGCGG CGGCGCCCGACTTCACCGACTGGGGCTTCACGCCCGAGGAAAAGGCGATCATCCTTGCCGAAGGTGCGCTGGTCGAGGAG ACGCCCTATGGCGACCAGCCTTATGTGACGACGCGCGGCTTTTTCCGGTCGGGCGAGGCGAACCGGCTGCTCGACGCCGA AATCCCCCTCACCTGCCCTGTCCGCCTGCTCCACGGGCAGGAGGATGGCGACGTTCCGCCCGACATCAGCCTGCGCCTGG CGGCGGCGCTCGCGAGCGACGATGTGCAGGTCACGCTCGTCAAGGGCGGCGATCACCGCCTGTCGCGCGACACCGACATC GCGCTGCTGATCGACACGGTCGCGCGCTTGGCGGCCGGAAACTAA
Upstream 100 bases:
>100_bases AATTCCGTTCGCATCGAGCGAAGTCGAGATGCTCATCGGTCATTCACGCCTTCGGGGTGTCTCGACTTCGCTCGACACGA ACGGGAATAGGAGGCCCTTT
Downstream 100 bases:
>100_bases AGCTTGATTGAAAAAGCCTCGTTCCCCCGCGAAGGCGAGGGCACGGCTTTTCCATTCACCGATGTCCGAGGATGTTCATG GCTCGCAGCGACTTTCGTTT
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MSEPSATHYLDRTGRPRLAYRFTPGAGPTIVFLPGYMSDMAGGKATALFDWAAAEARACLLLDYAGCGLSDGLFAEQTLL DWRGDVLDLIDAKVDGPVILVGSSMGGWLMLLTALAIVRRDGPGRVAGLVGIAAAPDFTDWGFTPEEKAIILAEGALVEE TPYGDQPYVTTRGFFRSGEANRLLDAEIPLTCPVRLLHGQEDGDVPPDISLRLAAALASDDVQVTLVKGGDHRLSRDTDI ALLIDTVARLAAGN
Sequences:
>Translated_254_residues MSEPSATHYLDRTGRPRLAYRFTPGAGPTIVFLPGYMSDMAGGKATALFDWAAAEARACLLLDYAGCGLSDGLFAEQTLL DWRGDVLDLIDAKVDGPVILVGSSMGGWLMLLTALAIVRRDGPGRVAGLVGIAAAPDFTDWGFTPEEKAIILAEGALVEE TPYGDQPYVTTRGFFRSGEANRLLDAEIPLTCPVRLLHGQEDGDVPPDISLRLAAALASDDVQVTLVKGGDHRLSRDTDI ALLIDTVARLAAGN >Mature_253_residues SEPSATHYLDRTGRPRLAYRFTPGAGPTIVFLPGYMSDMAGGKATALFDWAAAEARACLLLDYAGCGLSDGLFAEQTLLD WRGDVLDLIDAKVDGPVILVGSSMGGWLMLLTALAIVRRDGPGRVAGLVGIAAAPDFTDWGFTPEEKAIILAEGALVEET PYGDQPYVTTRGFFRSGEANRLLDAEIPLTCPVRLLHGQEDGDVPPDISLRLAAALASDDVQVTLVKGGDHRLSRDTDIA LLIDTVARLAAGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI8923001, Length=249, Percent_Identity=40.5622489959839, Blast_Score=179, Evalue=3e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26954; Mature: 26823
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPSATHYLDRTGRPRLAYRFTPGAGPTIVFLPGYMSDMAGGKATALFDWAAAEARACL CCCCCCCHHHCCCCCCEEEEEECCCCCCEEEECCCHHHHHCCCCEEEEEEHHHHCCCEEE LLDYAGCGLSDGLFAEQTLLDWRGDVLDLIDAKVDGPVILVGSSMGGWLMLLTALAIVRR EEEECCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC DGPGRVAGLVGIAAAPDFTDWGFTPEEKAIILAEGALVEETPYGDQPYVTTRGFFRSGEA CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCEEECCCC NRLLDAEIPLTCPVRLLHGQEDGDVPPDISLRLAAALASDDVQVTLVKGGDHRLSRDTDI CEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCH ALLIDTVARLAAGN HHHHHHHHHHHCCC >Mature Secondary Structure SEPSATHYLDRTGRPRLAYRFTPGAGPTIVFLPGYMSDMAGGKATALFDWAAAEARACL CCCCCCHHHCCCCCCEEEEEECCCCCCEEEECCCHHHHHCCCCEEEEEEHHHHCCCEEE LLDYAGCGLSDGLFAEQTLLDWRGDVLDLIDAKVDGPVILVGSSMGGWLMLLTALAIVRR EEEECCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC DGPGRVAGLVGIAAAPDFTDWGFTPEEKAIILAEGALVEETPYGDQPYVTTRGFFRSGEA CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCEEECCCC NRLLDAEIPLTCPVRLLHGQEDGDVPPDISLRLAAALASDDVQVTLVKGGDHRLSRDTDI CEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCH ALLIDTVARLAAGN HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA