Click here to switch to the map view.

The map label for this gene is iscR [H]

Identifier: 103486168

GI number: 103486168

Start: 683984

End: 684484

Strand: Reverse

Name: iscR [H]

Synonym: Sala_0675

Alternate gene names: 103486168

Gene position: 684484-683984 (Counterclockwise)

Preceding gene: 103486169

Following gene: 103486167

Centisome position: 20.46

GC content: 70.46

Gene sequence:

>501_bases
ATGCGCCTGTCCAACTTTGCCGATTATGCCGTGGTCCTGATGAGCGCCGCCGCCCGCCAGTGCGGATCGGTGCCGATTCA
CGCCGCGATGCTGGCGGAGCAAACGGGGATTCCCGGACCGACCGCGCAGAAGCTGGTGAGCCAGCTCGCGCGCGCAGGCC
TGCTCGTCGCCTCGCGCGGCAGCGGCGGCGGGGTGCGGCTCGCGCGGCCCGCAGCGGCGATCAGTGTCGCCGACATCATC
GAGGCGGTCGAAGGCCCGATCGCGCTGACGAGTTGCGTTGCCGAAGGGCGCCACGATTGTTCGCTCGAGGGCAGCTGCAA
GGTGCAGCCGCACTGGGGCGTCGTGAACGGCGCGGTGCGCGGGGCGTTGGCAGAGATCAGTTTGGCGAGTTTGACCGTCG
CCCCCGCGAAGGGTGCCGGGAGTCACGTGCCTCCCGGCACGGCCGCTGGAGGTCACGCACAAACGATAGCGGCCCCCGCC
TTCGCGGGGGCGACGAGTTAA

Upstream 100 bases:

>100_bases
GCGCGAGGCCGCGCTTGCTTGCACGCTGAACGAGCCTCCCCTATATAAGTGGAGTAATTTACTCTAGTTAAGAATCGTTC
GCAACGCGACGGATAAGAAT

Downstream 100 bases:

>100_bases
AGATATGATCGACAACACCGAAACCCGCATCAAGGACCAGGCCGCGCACGCCGCCGCCGCCAGGGTCGCCGATTATGAAC
ATGGCTGGTCCGCCGACATC

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRGSGGGVRLARPAAAISVADII
EAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVRGALAEISLASLTVAPAKGAGSHVPPGTAAGGHAQTIAAPA
FAGATS

Sequences:

>Translated_166_residues
MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRGSGGGVRLARPAAAISVADII
EAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVRGALAEISLASLTVAPAKGAGSHVPPGTAAGGHAQTIAAPA
FAGATS
>Mature_166_residues
MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRGSGGGVRLARPAAAISVADII
EAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVRGALAEISLASLTVAPAKGAGSHVPPGTAAGGHAQTIAAPA
FAGATS

Specific function: Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=138, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010242
- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16295; Mature: 16295

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRG
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEECC
SGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVR
CCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHH
GALAEISLASLTVAPAKGAGSHVPPGTAAGGHAQTIAAPAFAGATS
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRG
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEECC
SGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVR
CCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHH
GALAEISLASLTVAPAKGAGSHVPPGTAAGGHAQTIAAPAFAGATS
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]