| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yitW [H]
Identifier: 103486161
GI number: 103486161
Start: 678090
End: 678560
Strand: Reverse
Name: yitW [H]
Synonym: Sala_0668
Alternate gene names: 103486161
Gene position: 678560-678090 (Counterclockwise)
Preceding gene: 103486162
Following gene: 103486160
Centisome position: 20.28
GC content: 65.39
Gene sequence:
>471_bases ATGAGCGAGGAGCGGACAATCAGGATCGAGGAAGTCGCGCACGTCGAGGCGCCGCCCAAAGCGCGCGTCGCCGATGCCGA GACGGCGCCCGAGAAGCTCGAACGCAAGCGCGACTATCTGGAAGGCTTCCTTGCCGCCAGGCCCGCGGCGGTCGATCCGG CGGCGGTGGGCGGCGACCTTTACGAAGCGGTGATCGCGGCGCTCAAGGATATTTACGACCCCGAGATTCCGGTCAACATC TATGACCTCGGCCTCATCTACAATGTCGAGATCGACGAGGGGCATGTGATGGTGACGATGACGCTGACGACGCCGCATTG CCCGGTCGCCGAATCGATGCCGGGCGAGGTCGAGCTGCGCGTCGGCGCGGTTCCGGGGGTCGGCGACGCCGAGGTCAATC TGGTGTGGGATCCGCCGTGGAGCCCCGCAAACATGAGCGACGAGGCGCGGTTAGAGTTGGGGATGTTGTGA
Upstream 100 bases:
>100_bases GCGTGCCCGCGACCGCGCGCGCGAGTTTCGGTTTGTACAGCAATGACGACGATGTGGCGGCGCTGATCGACGGCCTCGCC CGCGTCGAAAGGATTTTCGG
Downstream 100 bases:
>100_bases CGAAAAAGCCCCTTCCCTTCAGGGGAGGGGCAACGAAGACCTGGCAGCTTGCTGCCCGGTCGTAGTGGGGTGGGGCCTAT CGGCCTTGCTCAAGGCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MSEERTIRIEEVAHVEAPPKARVADAETAPEKLERKRDYLEGFLAARPAAVDPAAVGGDLYEAVIAALKDIYDPEIPVNI YDLGLIYNVEIDEGHVMVTMTLTTPHCPVAESMPGEVELRVGAVPGVGDAEVNLVWDPPWSPANMSDEARLELGML
Sequences:
>Translated_156_residues MSEERTIRIEEVAHVEAPPKARVADAETAPEKLERKRDYLEGFLAARPAAVDPAAVGGDLYEAVIAALKDIYDPEIPVNI YDLGLIYNVEIDEGHVMVTMTLTTPHCPVAESMPGEVELRVGAVPGVGDAEVNLVWDPPWSPANMSDEARLELGML >Mature_155_residues SEERTIRIEEVAHVEAPPKARVADAETAPEKLERKRDYLEGFLAARPAAVDPAAVGGDLYEAVIAALKDIYDPEIPVNIY DLGLIYNVEIDEGHVMVTMTLTTPHCPVAESMPGEVELRVGAVPGVGDAEVNLVWDPPWSPANMSDEARLELGML
Specific function: Unknown
COG id: COG2151
COG function: function code R; Predicted metal-sulfur cluster biosynthetic enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MIP18 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002744 [H]
Pfam domain/function: PF01883 DUF59 [H]
EC number: NA
Molecular weight: Translated: 16961; Mature: 16830
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEERTIRIEEVAHVEAPPKARVADAETAPEKLERKRDYLEGFLAARPAAVDPAAVGGDL CCCCCEEEEEHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHH YEAVIAALKDIYDPEIPVNIYDLGLIYNVEIDEGHVMVTMTLTTPHCPVAESMPGEVELR HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEE VGAVPGVGDAEVNLVWDPPWSPANMSDEARLELGML EECCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCC >Mature Secondary Structure SEERTIRIEEVAHVEAPPKARVADAETAPEKLERKRDYLEGFLAARPAAVDPAAVGGDL CCCCEEEEEHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHH YEAVIAALKDIYDPEIPVNIYDLGLIYNVEIDEGHVMVTMTLTTPHCPVAESMPGEVELR HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEE VGAVPGVGDAEVNLVWDPPWSPANMSDEARLELGML EECCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9025291; 9384377 [H]