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The map label for this gene is yddE [C]

Identifier: 103486146

GI number: 103486146

Start: 664627

End: 665448

Strand: Reverse

Name: yddE [C]

Synonym: Sala_0653

Alternate gene names: 103486146

Gene position: 665448-664627 (Counterclockwise)

Preceding gene: 103486147

Following gene: 103486144

Centisome position: 19.89

GC content: 68.86

Gene sequence:

>822_bases
ATGAGCGCATCGCGCCGCCTGCCGATCAGCCGCGTTGACGCCTTTGCCGACCGGCCCTTCACCGGCAATCCCGCTGCGGT
GATGCCGCTCGAAGAATGGCTCGACGATGCGACATTGCGGGCAATCGCGGCCGAAAACAACCTGTCGGAAACCGCCTTTC
TGGTGCCCGACGAGAGCGGCGACGCCGATTATGAACTGCGCTGGTTCACCCCGACGGTCGAGGTGGCGCTGTGCGGTCAT
GCGACGCTGGCGAGCGGGCATGTGCTGCTGTCGGCGGCGCAATGGCGGAGCGATATGCGCTTTCGCACACGCAAGGCGGG
CATCCTGCGCGTCGCGCGCGATGGGGACGAAGAGGGCTATCGGATGACGCTGCCCGCCTTTACGCCCGCGCCCAGAGCCA
TGCCCGACATCGTCCGCGCGCTGGGCGGGCAGCCGGTCGAGACGCTGTGGCACGAGGGCGGCTATGCGGTAATCGTTTAT
CCCGACGCGGCGAGCGTCCGCGCGCTGACGCCCGACTTTCGCGCGCTGAGCAAAGGCGGCGACATCCTCTATATCGCGAC
CGCACCCGGTACCGGCGACGCATCCGGCGCCGATGTCGTCAGCCGCGCCTTCGCGCCAGCCGCCGGGATCGACGAAGACC
CGGTGACCGGATCGGCGCACAGCGCGCTCGCCCCCTATTGGACGACGCGGCTGGGCCGCGACGCCTTTGCGGCCTATCAG
GCGAGCGCGCGTGGCGGCCACCTCGGCTGCCGCCTCGACGGCGACATGGTCGAACTGACGGGCCGCTGCGTCACGACGCT
GGTAGGCGATTTCCTGCTATAA

Upstream 100 bases:

>100_bases
CCGAGCGAATCGAGTTCTGGCAGGACCGCGCCCACCGGCTCCACGAACGAACGCTGTTCGAGCGCACCGCGATCGGCTGG
ACGAAAGGATATCTCTATCC

Downstream 100 bases:

>100_bases
GGCCGCGGTCAGATCCGCCAGGTGCCGTCGCAGCGCGGGAAACTGATCGTCCCTGGTCACGCCCAGCCGCACAATCGTCA
CGCGCTGCGACGGTGAGACG

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSASRRLPISRVDAFADRPFTGNPAAVMPLEEWLDDATLRAIAAENNLSETAFLVPDESGDADYELRWFTPTVEVALCGH
ATLASGHVLLSAAQWRSDMRFRTRKAGILRVARDGDEEGYRMTLPAFTPAPRAMPDIVRALGGQPVETLWHEGGYAVIVY
PDAASVRALTPDFRALSKGGDILYIATAPGTGDASGADVVSRAFAPAAGIDEDPVTGSAHSALAPYWTTRLGRDAFAAYQ
ASARGGHLGCRLDGDMVELTGRCVTTLVGDFLL

Sequences:

>Translated_273_residues
MSASRRLPISRVDAFADRPFTGNPAAVMPLEEWLDDATLRAIAAENNLSETAFLVPDESGDADYELRWFTPTVEVALCGH
ATLASGHVLLSAAQWRSDMRFRTRKAGILRVARDGDEEGYRMTLPAFTPAPRAMPDIVRALGGQPVETLWHEGGYAVIVY
PDAASVRALTPDFRALSKGGDILYIATAPGTGDASGADVVSRAFAPAAGIDEDPVTGSAHSALAPYWTTRLGRDAFAAYQ
ASARGGHLGCRLDGDMVELTGRCVTTLVGDFLL
>Mature_272_residues
SASRRLPISRVDAFADRPFTGNPAAVMPLEEWLDDATLRAIAAENNLSETAFLVPDESGDADYELRWFTPTVEVALCGHA
TLASGHVLLSAAQWRSDMRFRTRKAGILRVARDGDEEGYRMTLPAFTPAPRAMPDIVRALGGQPVETLWHEGGYAVIVYP
DAASVRALTPDFRALSKGGDILYIATAPGTGDASGADVVSRAFAPAAGIDEDPVTGSAHSALAPYWTTRLGRDAFAAYQA
SARGGHLGCRLDGDMVELTGRCVTTLVGDFLL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=287, Percent_Identity=37.2822299651568, Blast_Score=144, Evalue=6e-35,
Organism=Homo sapiens, GI74316009, Length=250, Percent_Identity=37.2, Blast_Score=127, Evalue=7e-30,
Organism=Escherichia coli, GI1787737, Length=237, Percent_Identity=34.1772151898734, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17542160, Length=318, Percent_Identity=35.2201257861635, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=318, Percent_Identity=35.2201257861635, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=317, Percent_Identity=33.7539432176656, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=317, Percent_Identity=33.7539432176656, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=233, Percent_Identity=30.9012875536481, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29124; Mature: 28993

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASRRLPISRVDAFADRPFTGNPAAVMPLEEWLDDATLRAIAAENNLSETAFLVPDESG
CCCCCCCCHHHHHHHHCCCCCCCCCEECCHHHHHCHHHHEEECCCCCCCCEEEEEECCCC
DADYELRWFTPTVEVALCGHATLASGHVLLSAAQWRSDMRFRTRKAGILRVARDGDEEGY
CCCEEEEEECCEEEEEEECCCEECCCEEEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCE
RMTLPAFTPAPRAMPDIVRALGGQPVETLWHEGGYAVIVYPDAASVRALTPDFRALSKGG
EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHCCC
DILYIATAPGTGDASGADVVSRAFAPAAGIDEDPVTGSAHSALAPYWTTRLGRDAFAAYQ
CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
ASARGGHLGCRLDGDMVELTGRCVTTLVGDFLL
HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SASRRLPISRVDAFADRPFTGNPAAVMPLEEWLDDATLRAIAAENNLSETAFLVPDESG
CCCCCCCHHHHHHHHCCCCCCCCCEECCHHHHHCHHHHEEECCCCCCCCEEEEEECCCC
DADYELRWFTPTVEVALCGHATLASGHVLLSAAQWRSDMRFRTRKAGILRVARDGDEEGY
CCCEEEEEECCEEEEEEECCCEECCCEEEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCE
RMTLPAFTPAPRAMPDIVRALGGQPVETLWHEGGYAVIVYPDAASVRALTPDFRALSKGG
EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHCCC
DILYIATAPGTGDASGADVVSRAFAPAAGIDEDPVTGSAHSALAPYWTTRLGRDAFAAYQ
CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
ASARGGHLGCRLDGDMVELTGRCVTTLVGDFLL
HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]