| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485920
Identifier: 103485920
GI number: 103485920
Start: 432364
End: 433305
Strand: Reverse
Name: 103485920
Synonym: Sala_0427
Alternate gene names: NA
Gene position: 433305-432364 (Counterclockwise)
Preceding gene: 103485921
Following gene: 103485919
Centisome position: 12.95
GC content: 64.12
Gene sequence:
>942_bases ATGGCCTATCGCAAGGGACAGAGCGGCGGCTTGTCGCCCGCCACCCGCATCACCCAGGAAATCATCGCCCGTCTGGAAGC AGGCACGAAGCCGTGGATCAAGCCGTGGCGCGGTGTCCCGGTCTCCCGCCCCTTGCGGGCCTGCGGGATCCCGTACCGCG GTATGAACGTGTTCTGGCTGTGGATGGTCGCTGACATGTGCGGCTACGCCTCGCCGTTCTGGATGACCTACAACCAGGCA CAATCGCTCGGAGCCCAGGTCCGCAAGGGCGAGAAGTCGACCATCGCGATATTCTACAAGAGCTACACCAAGGAGGTGGA AGCCCCCGATACCGGCGAAAAGACCGACGAAGCCCGCCGGGTGCTGAAGGCCTATCCGGTCTTCAATGCCGATCAGGTCG AAGGTCTGCCCGAGCGCTTCCATCCGGCCGCAACGCTCGAACTGGTCGAGCCTGAAGGGCGCGAGGCCGAGCTCGACGCC TTCTTCGCTGCCATCCCAGTCAATTTGCGTCATCAGGGCTGCGAAGCCTATTATGAACCGACTGCGGATCGCGTCACGAT GCCGCCGGTCAGCCTGTTTGGCGGGTTCGATCACTACTATGCCACGCTCGCCCACGAGCTGTCGCACTGGACCGGCCATG CCAGCCGCCTGGGCCGCGATCTCAAGAACCGCTTCGGCACTTCCGCCTACGCCGCCGAAGAACTGGTCGCCGAACTCTCC AGTGCCATGCTGGGTGCTGAGCTGGGGCTGCCGGTCACGCATCTCGACAGCCACGCGAGCTATATCGAGCACTGGCTCAA GCTTCTGAAGGACGACGACCGCGCCATCCTGACCGCTGCGGCCAAGGCCGAAGAAGCTGCGAGCCTGCTGCTGAAGCTCG GCGGGAAGATCATTCCCGAGCAGTCTGACGATGCGTCCGACGACGCTGCGCTGGCGGCCTGA
Upstream 100 bases:
>100_bases CTTCCTTTTTGGAAGGAGAGCGGAGGGGGCTCGAGACCTTGTGGCACTGACCGGCGAGCCCGTCGCCGACTGTCCGGATG CCTCAATCAGGAGACCCATC
Downstream 100 bases:
>100_bases GGGAGGATGCCATGGGCCGATCAGTCAGCTATCCCAGCGGCGCAATTGTCGCCTTTACGGTGCTCGACGTTGAAAGCGAC GACGATTGGGAATTCGAGTA
Product: antirestriction protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MAYRKGQSGGLSPATRITQEIIARLEAGTKPWIKPWRGVPVSRPLRACGIPYRGMNVFWLWMVADMCGYASPFWMTYNQA QSLGAQVRKGEKSTIAIFYKSYTKEVEAPDTGEKTDEARRVLKAYPVFNADQVEGLPERFHPAATLELVEPEGREAELDA FFAAIPVNLRHQGCEAYYEPTADRVTMPPVSLFGGFDHYYATLAHELSHWTGHASRLGRDLKNRFGTSAYAAEELVAELS SAMLGAELGLPVTHLDSHASYIEHWLKLLKDDDRAILTAAAKAEEAASLLLKLGGKIIPEQSDDASDDAALAA
Sequences:
>Translated_313_residues MAYRKGQSGGLSPATRITQEIIARLEAGTKPWIKPWRGVPVSRPLRACGIPYRGMNVFWLWMVADMCGYASPFWMTYNQA QSLGAQVRKGEKSTIAIFYKSYTKEVEAPDTGEKTDEARRVLKAYPVFNADQVEGLPERFHPAATLELVEPEGREAELDA FFAAIPVNLRHQGCEAYYEPTADRVTMPPVSLFGGFDHYYATLAHELSHWTGHASRLGRDLKNRFGTSAYAAEELVAELS SAMLGAELGLPVTHLDSHASYIEHWLKLLKDDDRAILTAAAKAEEAASLLLKLGGKIIPEQSDDASDDAALAA >Mature_312_residues AYRKGQSGGLSPATRITQEIIARLEAGTKPWIKPWRGVPVSRPLRACGIPYRGMNVFWLWMVADMCGYASPFWMTYNQAQ SLGAQVRKGEKSTIAIFYKSYTKEVEAPDTGEKTDEARRVLKAYPVFNADQVEGLPERFHPAATLELVEPEGREAELDAF FAAIPVNLRHQGCEAYYEPTADRVTMPPVSLFGGFDHYYATLAHELSHWTGHASRLGRDLKNRFGTSAYAAEELVAELSS AMLGAELGLPVTHLDSHASYIEHWLKLLKDDDRAILTAAAKAEEAASLLLKLGGKIIPEQSDDASDDAALAA
Specific function: Unknown
COG id: COG4227
COG function: function code L; Antirestriction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017113 - InterPro: IPR013610 [H]
Pfam domain/function: PF08401 DUF1738 [H]
EC number: NA
Molecular weight: Translated: 34501; Mature: 34370
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYRKGQSGGLSPATRITQEIIARLEAGTKPWIKPWRGVPVSRPLRACGIPYRGMNVFWL CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHH WMVADMCGYASPFWMTYNQAQSLGAQVRKGEKSTIAIFYKSYTKEVEAPDTGEKTDEARR HHHHHHHCCCCCHHEEHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCHHHHHH VLKAYPVFNADQVEGLPERFHPAATLELVEPEGREAELDAFFAAIPVNLRHQGCEAYYEP HHHHCCCCCCHHHCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHCCCHHHCCC TADRVTMPPVSLFGGFDHYYATLAHELSHWTGHASRLGRDLKNRFGTSAYAAEELVAELS CCCCEECCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH SAMLGAELGLPVTHLDSHASYIEHWLKLLKDDDRAILTAAAKAEEAASLLLKLGGKIIPE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC QSDDASDDAALAA CCCCCCCCHHCCC >Mature Secondary Structure AYRKGQSGGLSPATRITQEIIARLEAGTKPWIKPWRGVPVSRPLRACGIPYRGMNVFWL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHH WMVADMCGYASPFWMTYNQAQSLGAQVRKGEKSTIAIFYKSYTKEVEAPDTGEKTDEARR HHHHHHHCCCCCHHEEHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCHHHHHH VLKAYPVFNADQVEGLPERFHPAATLELVEPEGREAELDAFFAAIPVNLRHQGCEAYYEP HHHHCCCCCCHHHCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHCCCHHHCCC TADRVTMPPVSLFGGFDHYYATLAHELSHWTGHASRLGRDLKNRFGTSAYAAEELVAELS CCCCEECCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH SAMLGAELGLPVTHLDSHASYIEHWLKLLKDDDRAILTAAAKAEEAASLLLKLGGKIIPE HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC QSDDASDDAALAA CCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]