| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485864
Identifier: 103485864
GI number: 103485864
Start: 380313
End: 381038
Strand: Reverse
Name: 103485864
Synonym: Sala_0369
Alternate gene names: NA
Gene position: 381038-380313 (Counterclockwise)
Preceding gene: 103485866
Following gene: 103485860
Centisome position: 11.39
GC content: 69.97
Gene sequence:
>726_bases ATGACGACAGCAATCGACACCGATATCGCGGCCCGCCTCGCGGCGACCGACTGGGACGCTGCGGCCACCGCGCTCGACGG CGCGGGATGGGCGGTGCTGCCGGGGCTGCTCGGCGATGCCGAATGCGACGCGCTTGCCGCCGCCTACGACATGCCGCCGC TGTTCCGCAGCCATATCCAGATGGCGCGCCACGGCTTCGGGCGCGGCGAATATCGCTATTTCGCCTATCCGCTGCCGCCG CTCGTCGCAGCGCTGCGCAGCCGCCTCTATCCGCGCCTCGCGCCACTCGCGAACCGCTGGCACGAACGCATGGGGCTGCC CGCGCGCTTTCCCTCCGACCACGCCGATTTCCTCGCGCGCTGCGATGCCGCCGGGCAGCGGCGGCCGACACCGCTGCTGC TGCAATATGGACCGGGCGACTACAACTGTCTGCATCAGGATCTATACGGCGAGCATGTCTTTCCGGTGCAGGCGGCGGTG CTGCTGTCGGCGCCGGGGGAAGCGTTCACCGGCGGCGAGTTCATTCTCACCGAACAGCGGCCGCGGATGCAGTCGCGCGC CGCGGTCGTGCCGCTGGCGAAGGGCGATGCCGTGATCTTCGCGGTCAATGTCCGTCCGGTGCGCGGGTCGCGCGGCGATT ACCGCGTTGCGATGCGTCACGGCGTCAGCGAAATCCGTTCGGGGCGGCGGCACACGCTGGGGGTGATTTTCCACGACGCC GCCTGA
Upstream 100 bases:
>100_bases CGATGGCGTTCAGCTGGATCATGCAGCGCGGCGATTGAACCTTTGTTTTGGCCGCAAGAAACGGGGCGCGTATCGCCGAT GCCCACGCCATGAGCAGTCC
Downstream 100 bases:
>100_bases GCGGCCTCACGCCACCCCGTGATACCACCACACGCCGTCGCGATCCTCGCGCCTCACCCGCCCCTCGACCTCCAGCCGCT TCAGATGCGCGAGCGCTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTTAIDTDIAARLAATDWDAAATALDGAGWAVLPGLLGDAECDALAAAYDMPPLFRSHIQMARHGFGRGEYRYFAYPLPP LVAALRSRLYPRLAPLANRWHERMGLPARFPSDHADFLARCDAAGQRRPTPLLLQYGPGDYNCLHQDLYGEHVFPVQAAV LLSAPGEAFTGGEFILTEQRPRMQSRAAVVPLAKGDAVIFAVNVRPVRGSRGDYRVAMRHGVSEIRSGRRHTLGVIFHDA A
Sequences:
>Translated_241_residues MTTAIDTDIAARLAATDWDAAATALDGAGWAVLPGLLGDAECDALAAAYDMPPLFRSHIQMARHGFGRGEYRYFAYPLPP LVAALRSRLYPRLAPLANRWHERMGLPARFPSDHADFLARCDAAGQRRPTPLLLQYGPGDYNCLHQDLYGEHVFPVQAAV LLSAPGEAFTGGEFILTEQRPRMQSRAAVVPLAKGDAVIFAVNVRPVRGSRGDYRVAMRHGVSEIRSGRRHTLGVIFHDA A >Mature_240_residues TTAIDTDIAARLAATDWDAAATALDGAGWAVLPGLLGDAECDALAAAYDMPPLFRSHIQMARHGFGRGEYRYFAYPLPPL VAALRSRLYPRLAPLANRWHERMGLPARFPSDHADFLARCDAAGQRRPTPLLLQYGPGDYNCLHQDLYGEHVFPVQAAVL LSAPGEAFTGGEFILTEQRPRMQSRAAVVPLAKGDAVIFAVNVRPVRGSRGDYRVAMRHGVSEIRSGRRHTLGVIFHDAA
Specific function: Unknown
COG id: COG3826
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018655 [H]
Pfam domain/function: PF09859 DUF2086 [H]
EC number: NA
Molecular weight: Translated: 26328; Mature: 26197
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAIDTDIAARLAATDWDAAATALDGAGWAVLPGLLGDAECDALAAAYDMPPLFRSHIQ CCCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHH MARHGFGRGEYRYFAYPLPPLVAALRSRLYPRLAPLANRWHERMGLPARFPSDHADFLAR HHHCCCCCCCEEEEEECHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH CDAAGQRRPTPLLLQYGPGDYNCLHQDLYGEHVFPVQAAVLLSAPGEAFTGGEFILTEQR HCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCEEEEECCC PRMQSRAAVVPLAKGDAVIFAVNVRPVRGSRGDYRVAMRHGVSEIRSGRRHTLGVIFHDA CCHHHCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECC A C >Mature Secondary Structure TTAIDTDIAARLAATDWDAAATALDGAGWAVLPGLLGDAECDALAAAYDMPPLFRSHIQ CCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHH MARHGFGRGEYRYFAYPLPPLVAALRSRLYPRLAPLANRWHERMGLPARFPSDHADFLAR HHHCCCCCCCEEEEEECHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH CDAAGQRRPTPLLLQYGPGDYNCLHQDLYGEHVFPVQAAVLLSAPGEAFTGGEFILTEQR HCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCEEEEECCC PRMQSRAAVVPLAKGDAVIFAVNVRPVRGSRGDYRVAMRHGVSEIRSGRRHTLGVIFHDA CCHHHCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHCCHHHHHCCCCEEEEEEEECC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]